Tools

Select All – Select all contigs currently displayed on the canvas from left to right

Clear Selected – Clear all currently selected contigs

Find Paths – Find paths between selected contigs (For more information see “Find Paths” below)

Write FASTA – Write a scaffold of currently selected contigs, if an edge is found between two sequential contigs, use the edge to fill in sequence or remove overlaps, otherwise the user defined scaffolding characters will be use.

Write multiFASTA – Write currently selected contigs as a multiFASTA, each selected contig will be written as its own entry

Colour options – Change options relating to contig colours (for more information see “Contig Selection” below)

Load Special – Load custom colours from a text file (for more information see “Contig Selection” below)