CaMAP

Calcium imaging mapping and analysis pipeline. Extracts neural events from calcium traces, aligns them with animal behavior, and computes spatial tuning metrics including rate maps, spatial information, stability, and place-cell classification.

Alpha-stage in 0.x — APIs may change between minor releases.

Install

pip install camap

oasis-deconv is required for the deconvolution step; see Installation for the recommended install path.

Minimum example

from camap.dataset import BaseCaMAPDataset

ds = BaseCaMAPDataset.from_yaml("config.yaml", "data_paths.yaml")
ds.load()
ds.preprocess_behavior()
ds.deconvolve()
ds.match_events()
ds.compute_occupancy()
ds.analyze_units()
ds.save_bundle("output/session_name")

Documentation

• Installation
• Quickstart
• Pipeline Details

License

AGPL-3.0. See LICENSE.