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Problem

We're currently uploading the simularium results file twice for packings run on the cellpack server, once on its own to the /simularium subdirectory and once with all the output files to the /runs subdirectory. This is redundant and silly!
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Solution

When we're running a packing on the cellpack server, skip the step where we upload the simularium file on its own. When we upload the results directory, keep track of the path for the simularium file within that and upload that to firebase, along with the output files directory path.

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Packing analysis report

Analysis for packing results located at cellpack/tests/outputs/test_spheres/spheresSST

Ingredient name Encapsulating radius Average number packed
ext_A 25 236.0

Packing image

Packing image

Distance analysis

Expected minimum distance: 50.00
Actual minimum distance: 50.01

Ingredient key Pairwise distance distribution
ext_A Distance distribution ext_A

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2 participants