Skip to content

Remove S3 data access guidance for Pf8#77

Merged
nw20 merged 1 commit intomasterfrom
pf8-remove-s3-info
Apr 1, 2026
Merged

Remove S3 data access guidance for Pf8#77
nw20 merged 1 commit intomasterfrom
pf8-remove-s3-info

Conversation

@nw20
Copy link
Copy Markdown
Collaborator

@nw20 nw20 commented Mar 26, 2026

These edits remove guidance for accessing Pf8 data via Sanger S3 storage.

  1. Remove mention of S3 from docs/cloud_data_access/parasite_cloud_data_access.ipynb
  2. Remove examples using S3 data from docs/pf8/Data_access.ipynb
  3. Add info banner at head of docs/pf8/Data_access.ipynb explaining these ongoing changes

NOTE: until Pf8 snp-only zarr can be stored on GCS and integrated into malariagen_data package, we will maintain an example accessing via S3. This will continue to work until the snp-only data is removed from S3. If/when snp-only zarr is available via GCS, we can make another update to docs/pf8/Data_access.ipynb.

These changes are ready to merge once we have removed S3 URLs from malariagen_data

@nw20
Copy link
Copy Markdown
Collaborator Author

nw20 commented Apr 1, 2026

S3 URL removed as default from malariagen_data.Pf8() - see this PR

@nw20 nw20 merged commit b56889f into master Apr 1, 2026
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant