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6 changes: 5 additions & 1 deletion bin/run_injected_rc2_subset.sh
Original file line number Diff line number Diff line change
Expand Up @@ -39,7 +39,7 @@ echo "[RC2_SUBSET_INJECT_CATS] Injection catalog input collection: $RC2_SUBSET_I
RC2_SUBSET_INJECT_COLL=${RC2_SUBSET_INJECT_COLL:-u/$USER/RC2_subset/injected_nightly}
echo "[RC2_SUBSET_INJECT_COLL] New injected output collection : $RC2_SUBSET_INJECT_COLL"

RC2_SUBSET_INJECT_PIPE=${RC2_SUBSET_INJECT_PIPE:-$DRP_PIPE_DIR/pipelines/HSC/DRP-RC2_subset+injected_deepCoadd.yaml}
RC2_SUBSET_INJECT_PIPE=${RC2_SUBSET_INJECT_PIPE:-$DRP_PIPE_DIR/pipelines/HSC/DRP-RC2_subset+injected_deepCoadd_stars.yaml}
echo "[RC2_SUBSET_INJECT_PIPE] Source injection pipeline def YAML: $RC2_SUBSET_INJECT_PIPE"

# Check that required file paths exist.
Expand Down Expand Up @@ -94,6 +94,10 @@ injected_cmd_3="$INJECTED_PIPETASK_RUN#injected_nightlyStep3 -j $RC2_SUBSET_PROC
echo -e "\nRunning injected_nightlyStep3 on tract 9813, patch 40\n$injected_cmd_3"
eval $injected_cmd_3

injected_cmd_coadd_analysis="$INJECTED_PIPETASK_RUN#injected_stars_coadd_analysis -j $RC2_SUBSET_PROC -d \"skymap = 'hsc_rings_v1' AND tract = 9813 AND patch in (40)\""
echo -e "\nRunning injected_coadd_analysis on tract 9813, patch 40\n$injected_cmd_coadd_analysis"
eval $injected_cmd_coadd_analysis

# Capture the end time and calculate the total runtime.
end_time=$(date +%s)
runtime=$((end_time - start_time))
Expand Down
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