Skip to content
@linnarsson-lab

Linnarsson Lab

Software developed by members of the Linnarsson lab at Karolinska Institutet

Pinned Loading

  1. loompy loompy Public

    Python implementation of the Loom file format - http://loompy.org

    Python 148 36

  2. cytograph2 cytograph2 Public

    Python 14

  3. BoneFight BoneFight Public

    Python 9 2

Repositories

Showing 10 of 52 repositories
  • glioblastoma_wound_response Public

    Repository for Glioblastoma scRNA-seq and EEL-FISH data and code

    linnarsson-lab/glioblastoma_wound_response’s past year of commit activity
    Jupyter Notebook 5 0 0 0 Updated Mar 23, 2026
  • human-meninges-development Public

    Supplementary code and data to our study of the developing human meninges by Vinsland et al. (manuscript in preparation).

    linnarsson-lab/human-meninges-development’s past year of commit activity
    Jupyter Notebook 3 BSD-2-Clause 0 0 0 Updated Feb 18, 2026
  • adult-human-brain Public

    Cytograph version used for adult human-brain analysis

    linnarsson-lab/adult-human-brain’s past year of commit activity
    Jupyter Notebook 97 BSD-2-Clause 21 11 0 Updated Jan 13, 2026
  • FISHspace Public
    linnarsson-lab/FISHspace’s past year of commit activity
    Python 0 0 0 0 Updated Nov 7, 2025
  • developing-human-brain Public
    linnarsson-lab/developing-human-brain’s past year of commit activity
    Jupyter Notebook 38 BSD-2-Clause 1 13 0 Updated Oct 24, 2025
  • shoji Public
    linnarsson-lab/shoji’s past year of commit activity
    Jupyter Notebook 6 BSD-2-Clause 0 1 0 Updated Oct 19, 2025
  • OTTR Public

    Organotypic Timelapse recording with Transcriptomic Readout (OTTR) links cell identity to cell behaviour in human tissues

    linnarsson-lab/OTTR’s past year of commit activity
    Jupyter Notebook 0 BSD-2-Clause 0 0 0 Updated Aug 29, 2025
  • fetal_brain_multiomics Public

    Supplementary files and notebooks to recreate figures.

    linnarsson-lab/fetal_brain_multiomics’s past year of commit activity
    HTML 21 BSD-2-Clause 1 0 0 Updated Aug 12, 2025
  • oligopy Public
    linnarsson-lab/oligopy’s past year of commit activity
    Python 2 1 0 1 Updated Jul 9, 2025
  • FISHscale Public

    Spatial analysis of FISH data

    linnarsson-lab/FISHscale’s past year of commit activity
    Jupyter Notebook 33 9 6 0 Updated May 20, 2025
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…