aptamCORE

GUI application for aptamer enrichment analysis

Project setup

git clone https://github.com/lifematics/aptamCORE.git
cd aptamCORE
npm install
# Please change permissions or create binaries if you are using linux system.
# Binaries in "tools" directory are compiled with Ubuntu 18.04.3 LTS (GNU/Linux 4.15.0-72-generic x86_64).
# chmod 755 tools/venn  tools/flash2  tools/cd-hit-est tools/filter_gz

Create linux binaries of tools

Please follow the instructions of each binary for FLASH2 and CD-HIT-EST . The source codes of filter_gz and venn are in tools/src and can be compiled with cmake command.

cd tools/src
cmake CMakeLists.txt
make
cp venn ../
cp filter_gz ../

Compiles and hot-reloads for development

Set up a server

npm run serve

Run the application

npm run debug

Compiles and minifies for production

npm run build

Builds a binary for Windows

npm run build
npm run package:win

Builds a binary for Linux

npm run build
npm run package:linux

Usage

Please see the wiki (Japanese).

Third party applications

FLASH2
CD-HIT-EST

License

MIT License

Copyright

Copyright (C) 2020 Lifematics Inc.