Feat: Adds support for new nextflow versions and changes version defaults#305
Open
l-mansouri wants to merge 6 commits intomainfrom
Open
Feat: Adds support for new nextflow versions and changes version defaults#305l-mansouri wants to merge 6 commits intomainfrom
l-mansouri wants to merge 6 commits intomainfrom
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Overview
This PR adds support for nextflow versions '25.04.8' and '25.10.4'. It also updates nextflow versions defaults for user imported pipelines and lifebit-owned pipelines.
JIRA
https://lifebit.atlassian.net/browse/LP-106665
https://lifebit.atlassian.net/browse/LP-106666
Changes
Acceptance Criteria
LP-106665
Scenario 1: New Nextflow version 25.04.8 is accepted by cloudos job run
Scenario 2: New Nextflow version 25.10.4 is accepted by cloudos job run
Scenario 3: An unsupported Nextflow version is rejected
Scenario 4: Azure defaults are unchanged
LP-106666
Scenario 1: Default Nextflow version for user imported workflows
Scenario 2: Default Nextflow version for Lifebit Platform workflows
Scenario 3: Azure defaults are unchanged