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Working Workflow Example#36

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rosecers wants to merge 204 commits intomasterfrom

cohesive_workflow

Commits on Feb 9, 2020

Commits on Feb 10, 2020

Supplemented Oneoff selection with Iterative wo/ Orthogonalising, Added customizable CUR utility intruction
Rose Cersonsky
committed
Enabling custom pi_functions for CUR
Rose Cersonsky
committed
Bugfix to KPCovR and SparseKPCovR: test kernel should be centered relative to uncentered train kernel
bhelfrecht
committed
Bugfix to KPCovR and SparseKPCovR: test kernel should be centered relative to uncentered train kernel

bhelfrecht
authored and
Rose Cersonsky
committed
Edits from Felix
Rose Cersonsky
committed
Edits from Felix
Rose Cersonsky
committed
Y reshape error
Rose Cersonsky
committed
Add a script to generate chemiscope input for PCovR style data
Luthaf
committed
Add a small section on how to create a chemiscope input
Luthaf
committed
Rescale the properties before creating the chemiscope input
Luthaf
committed
Doc-strings for CUR
Rose Cersonsky
committed
Removed old code from files
Rose Cersonsky
committed
W --> PXY or PTY in NB1
Rose Cersonsky
committed
W --> PXY or PTY in NB2
Rose Cersonsky
committed
W --> PXY or PTY in NB4
Rose Cersonsky
committed
W --> PTY or PKY in NB3
Rose Cersonsky
committed
W --> P?Y in utilities
Rose Cersonsky
committed

Commits on Feb 11, 2020

Bug fix in CUR
Rose Cersonsky
committed
Notation sync with manuscript
Rose Cersonsky
committed
Notation sync with manuscript
Rose Cersonsky
committed
f(A^TA)A^T
Rose Cersonsky
committed

Commits on Feb 12, 2020

Properly backrolling CUR
Rose Cersonsky
committed
Making plotting importable from any folder
Rose Cersonsky
committed
Small Bug/Typo in KPCovR Loss
rosecers
committed
Error in SKPCA
rosecers
committed
Plotting incompatibility
rosecers
committed

Commits on Feb 13, 2020

Commits on Feb 14, 2020

Commits on Feb 26, 2020

Merge branch 'master' of https://github.com/cosmo-epfl/kernel-tutorials
bhelfrecht
committed

Commits on Feb 28, 2020

Commits on Mar 4, 2020

Enabled 2D colormaps for Projections
Rose Cersonsky
committed

Commits on Mar 5, 2020

Swapped cmaps for X and Y
Rose Cersonsky
committed
Fixing multidimensional Y coloring
Rose Cersonsky
committed
Made CUR.py self-contained
Rose Cersonsky
committed

Commits on Mar 6, 2020

Make plotting compatible with scalar or array Y_scale and Y_center
bhelfrecht
committed

Commits on Mar 10, 2020

Bug fix in plotting
Rose Cersonsky
committed
Bug fix in plotting
Rose Cersonsky
committed

Commits on Mar 12, 2020

Fixing cb_ax
Rose Cersonsky
committed
Fixed bug in plotting
Rose Cersonsky
committed

Commits on Mar 17, 2020

Removing normalization of Ktilde and Ctilde in KPCovR, as phi is centered and normalized, leading to a scaling error
Rose Cersonsky
committed
125X (user, 5000 samples) speedup in kernel centering
Rose Cersonsky
committed

Commits on Mar 18, 2020

125X (user, 5000 samples) speedup in kernel centering
Rose Cersonsky
committed
125X (user, 5000 samples) speedup in kernel centering
Rose Cersonsky
committed
Merge branch 'master' of https://github.com/cosmo-epfl/kernel-tutorials
rosecers
committed

Commits on Mar 20, 2020

Fixing slowdown in KRR
Rose Cersonsky
committed
Merge branch 'master' of https://github.com/cosmo-epfl/kernel-tutorials
rosecers
committed

Commits on Mar 27, 2020

Overhaul of classes to define superclass structure and replace np.matmul with @
Rose Cersonsky
committed
Test NB for new classes
Rose Cersonsky
committed
Merge branch 'master' of https://github.com/cosmo-epfl/kernel-tutorials
rosecers
committed
Bug fix in classes.py
rosecers
committed

Commits on Mar 30, 2020

Moving kpcovr_contained back to kpcovr
Rose Cersonsky
committed
Update formatting
Luthaf
committed

Commits on Apr 2, 2020

Commits on Apr 7, 2020

Speed up to CUR
rosecers
committed

Commits on Apr 8, 2020

Commits on Apr 9, 2020

Commits on Apr 14, 2020

Removing comments
rosecers
committed
Update chemiscope input generation
Luthaf
committed
Made X optional for Sparse methods
Rose Cersonsky
committed
Merge branch 'master' of https://github.com/cosmo-epfl/kernel-tutorials
Rose Cersonsky
committed

Commits on Apr 16, 2020

Fix bugs in Y scaling and PCovR transformation
bhelfrecht
committed

Commits on Apr 17, 2020

Commits on Apr 21, 2020

Commits on Apr 22, 2020

Made colorbars truncatable
Rose Cersonsky
committed
Adding default colorbars into matplotlib
Rose Cersonsky
committed

Commits on Apr 28, 2020

Made it possible to pass additional properties not included into the model
Rose Cersonsky
committed

Commits on Apr 29, 2020

Made gaussian kernel more robust with structure-structure kernels
Rose Cersonsky
committed
Made gaussian kernel more robust with structure-structure kernels
Rose Cersonsky
committed
Variable name change for clarity
Rose Cersonsky
committed
Removed tqdm dependency of gaussian kernel
Rose Cersonsky
committed

Commits on Apr 30, 2020

Truncating inputted properties to 2 parameters for colormaps
Rose Cersonsky
committed

Commits on May 26, 2020

Simpler eig_inv implementation
ceriottm
committed

Commits on Jun 1, 2020

First go at a sklearn-style feature scaler
ceriottm
committed

Commits on Jun 2, 2020

Formatted PCovR fit functions ala sklearn
Rose Cersonsky
committed
WIP transformations in new PCovR class
bhelfrecht
committed
Pre-test PCovR
Rose Cersonsky
committed
Fixing an error in prediction
Rose Cersonsky
committed
Fixed bug in new PCovR, added test class
Rose Cersonsky
committed
overriding error with 1D projections
Rose Cersonsky
committed
Merge branch 'master' into sklearn_adaptation
Rose Cersonsky
committed
overriding error with 1D projections
Rose Cersonsky
committed
Merge branch 'master' into sklearn_adaptation
Rose Cersonsky
committed
Csting eigenvalues as real
Rose Cersonsky
committed
Finished pcovr test
Rose Cersonsky
committed
Made font sizes scalable and disabled 'Only plotting first column of Y' warning
Rose Cersonsky
committed
Overriding fs for kernel generation
Rose Cersonsky
committed
Merge branch 'master' into sklearn_adaptation
Rose Cersonsky
committed
Finished pcovr test
Rose Cersonsky
committed
Moved sklearn classes to separate folder
Rose Cersonsky
committed
Removed last wrong svd call
Rose Cersonsky
committed

Commits on Jun 3, 2020

Commits on Jun 23, 2020

Commits on Jun 24, 2020

Commits on Jun 25, 2020

Commits on Jul 2, 2020

Merge pull request #15 from cosmo-epfl/tutorials_check_ben
rosecers
authored

Commits on Sep 29, 2020

Commits on Oct 12, 2020

Commits on Oct 14, 2020

Commits on Oct 20, 2020

Merge pull request #19 from cosmo-epfl/sklearn_kernel_methods
rosecers
authored

Commits on Oct 21, 2020

Added details for clarity and corrected errors.
PKGuo
committed

Commits on Oct 27, 2020

Refined the third notebook_Draft
PKGuo
committed

Commits on Oct 30, 2020

Apply suggestions from code review

PKGuo
and
rosecers
authored

Commits on Oct 31, 2020

Romeved some unnecessary changes
PKGuo
committed

Commits on Nov 1, 2020

Enable nbextension to print variables in the markdown cell
PKGuo
committed

Commits on Nov 3, 2020

Removed unnecessary cells
PKGuo
committed

Commits on Nov 17, 2020

Commits on Nov 18, 2020

Commits on Feb 3, 2021

Massive nb clean
rosecers
committed

Commits on Feb 8, 2021