feat: adds aws-healthomics official power

README.md

@@ -13,6 +13,14 @@ Documentation is available at https://kiro.dev/docs/powers/
 
 ---
 
+### aws-healthomics
+
+**Create and Manage Bioinformatics Workflows with AWS HealthOmics** - create, migrate, run, debug and identify optimization opportunities for bioinformatics workflows in AWS HealthOmics.
+
+**MCP Servers:** awslabs.aws-healthomics-mcp-server
+
+---
+
 ### aws-infrastructure-as-code
 **Build AWS infrastructure with CDK and CloudFormation** - Generate well-architected AWS infrastructure with CDK and CloudFormation - access latest documentation, validate templates, and troubleshoot deployments.
 

aws-healthomics/POWER.md

@@ -0,0 +1,68 @@
+---
+name: "aws-healthomics"
+displayName: "AWS HealthOmics"
+description: "Create, migrate, run, debug and optimize genomics workflows in AWS HealthOmics"
+keywords: ["healthomics", "WDL", "CWL", "Nextflow", "workflow", "genomics", "bioinformatics", "pipeline"]
+author: "AWS"
+---
+
+# When to use this power
+
+When you want to create, migrate, run, debug and identify optimization opportunities for genomics workflows in AWS HealthOmics
+
+# When to Load Steering Files
+
+Whenever you are asked to perform a task related to any of the following scenarios - ensure you load and read the appropriate markdown file mentioned
+
+- Creating a workflow from a remote Git repository URL (GitHub, GitLab, Bitbucket) -> use `./steering_files/git-integration.md` (takes precedence over workflow-development.md)
+- Creating a new WDL, Nextflow or CWL workflow from local files -> use `./steering_files/workflow-development.md`
+- Onboarding an existing WDL workflow ensuring compatibility with HealthOmics -> use `.\steering_files/migration-guide-for-wdl.md`
+- Onboarding an existing Nextflow workflow ensuring compatibility with HealthOmics -> use `./steering_files/migration-guide-for-wdl.md`
+- Modifying, updating, or fixing an existing HealthOmics workflow -> use `./steering_files/workflow-versioning.md`
+- Diagnosing workflow creation issues -> use `./steering_files/troubleshooting.md`
+- Diagnosing run failures -> use `./steering_files/troubleshooting.md`
+- Using public containers with HealthOmics via ECR Pullthrough Caches -> use `./steering_files/ecr-pull-through-cache.md`
+
+
+# Onboarding
+
+1. **Ensure the user has valid AWS Credentials** These are used by the HealthOmics MCP server to interact with AWS Services.
+2. **Obtain the current account number**  Using `aws sts get-caller-identity`
+3. **Create a `config.toml`** Create a `.healthomics/config.toml` file to specify run parameters. This helps you, the agent, create workflows and start runs with the correct settings:
+
+    **config.toml:**
+    ```toml
+    // This is a service role used to start runs, it must have a trust policy for the omics principal
+    omics_iam_role = "arn:aws:iam::<ACCOUNT_ID>:role/<HEALTHOMICS_ROLE_NAME>"
+    // Outputs of runs are written here, the service role must have write permissions to this location
+    run_output_uri = "s3://<YOUR_BUCKET>/healthomics-outputs/"
+    run_storage_type = "DYNAMIC"  # Recommended for faster runs and automatic scaling
+    ```
+
+    - Ask the customer for the `omics_iam_role` and `run_output_uri` values. You may also offer to create them. Record the values by updating the toml
+    - ALWAYS use settings from `.healthomics/config.toml` when they are set
+4. **Dependencies** The MCP server configured by this power requires [`uvx`](https://docs.astral.sh/uv/getting-started/installation/)
+```
+
+# Integrations
+
+This power integrates with [AWS Healthomics MCP Server](https://github.com/awslabs/mcp/tree/main/src/aws-healthomics-mcp-server)  (Apache-2.0 license).
+
+
+# License
+
+```
+# Copyright Amazon.com, Inc. or its affiliates. All Rights Reserved.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+```

aws-healthomics/mcp.json

@@ -0,0 +1,17 @@
+{
+  "mcpServers": {
+    "aws-healthomics": {
+      "command": "uvx",
+      "args": [
+        "awslabs.aws-healthomics-mcp-server@latest"
+      ],
+      "timeout": 300000,
+      "env": {
+        "HEALTHOMICS_DEFAULT_MAX_RESULTS": "100"
+      },
+      "disabled": false,
+      "autoApprove": [
+      ]
+    }
+  }
+}