Prefix remapper

notebooks/uniprot_prefix_investigation/data/identifier_table_prefixes.txt

@@ -0,0 +1,171 @@
+ABCD
+AGR
+Agora
+Allergome
+AlphaFoldDB
+AntiFam
+Antibodypedia
+ArachnoServer
+Araport
+BMRB
+BRENDA
+Bgee
+BindingDB
+BioCyc
+BioGRID
+BioGRID-ORCS
+BioMuta
+CARD
+CAZy
+CCDS
+CD-CODE
+CDD
+CGD
+CIViC
+CORUM
+CPTAC
+CPTC
+CTD
+CarbonylDB
+ChEMBL
+ChiTaRS
+ClinPGx
+CollecTF
+ComplexPortal
+ConoServer
+DEPOD
+DIP
+DMDM
+DNASU
+DisGeNET
+DisProt
+DrugBank
+DrugCentral
+EC
+ELM
+EMDB
+ESTHER
+EchoBASE
+EnsemblBacteria
+EnsemblFungi
+EnsemblMetazoa
+EnsemblPlants
+EnsemblProtists
+EvolutionaryTrace
+ExpressionAtlas
+FlyBase
+FunCoup
+FunFam
+GO
+Gene3D
+GeneCards
+GeneID
+GeneReviews
+GeneTree
+GeneWiki
+GenomeRNAi
+GlyConnect
+GlyCosmos
+GlyGen
+Gramene
+GuidetoPHARMACOLOGY
+HAMAP
+HGNC
+HOGENOM
+HPA
+IDEAL
+IMGT_GENE-DB
+InParanoid
+IntAct
+InterPro
+JaponicusDB
+KEGG
+LegioList
+Leproma
+MEROPS
+MGI
+MIM
+MINT
+MaizeGDB
+MalaCards
+MassIVE
+MetOSite
+MoonDB
+MoonProt
+NCBITaxon
+NCBIfam
+NIAGADS
+OGP
+OMA
+OpenTargets
+Orphanet
+OrthoDB
+PAN-GO
+PANTHER
+PATRIC
+PCDDB
+PDB
+PDBsum
+PHI-base
+PIR
+PIRSF
+PRIDE
+PRINTS
+PRO
+PROSITE
+PathwayCommons
+PaxDb
+PeptideAtlas
+PeroxiBase
+Pfam
+Pharos
+PhosphoSitePlus
+PhylomeDB
+PlantReactome
+PomBase
+ProMEX
+Proteomes
+ProteomicsDB
+PseudoCAP
+Pumba
+REBASE
+REPRODUCTION-2DPAGE
+RGD
+RNAct
+Reactome
+SABIO-RK
+SASBDB
+SFLD
+SGD
+SIGNOR
+SMART
+SMR
+STRENDA-DB
+STRING
+SUPFAM
+SignaLink
+SwissLipids
+SwissPalm
+TAIR
+TCDB
+TopDownProteomics
+TubercuList
+UCSC
+UniLectin
+UniPathway
+UniProt
+VEuPathDB
+VGNC
+WBParaSite
+WormBase
+Xenbase
+YCharOS
+ZFIN
+dictyBase
+eggNOG
+ensembl
+euHCVdb
+genbank
+iPTMnet
+jPOST
+refseq

notebooks/uniprot_prefix_investigation/data/prefixes.txt

@@ -0,0 +1,103 @@
+Allergome
+ArachnoServer
+Araport
+BioCyc
+BioGRID
+BioMuta
+CCDS
+CGD
+CPTAC
+CRC64
+ChEMBL
+ChiTaRS
+CollecTF
+ComplexPortal
+ConoServer
+DIP
+DMDM
+DNASU
+DisProt
+DrugBank
+EMBL
+EMBL-CDS
+EMDB
+ESTHER
+EchoBASE
+Ensembl
+EnsemblGenome
+EnsemblGenome_PRO
+EnsemblGenome_TRS
+Ensembl_PRO
+Ensembl_TRS
+FlyBase
+GI
+GeneCards
+GeneID
+GeneReviews
+GeneTree
+GeneWiki
+Gene_Name
+Gene_ORFName
+Gene_OrderedLocusName
+Gene_Synonym
+GenomeRNAi
+GlyConnect
+GuidetoPHARMACOLOGY
+HGNC
+HOGENOM
+IDEAL
+JaponicusDB
+KEGG
+LegioList
+Leproma
+MEROPS
+MGI
+MIM
+MINT
+MaizeGDB
+NCBI_TaxID
+OMA
+OpenTargets
+Orphanet
+OrthoDB
+PATRIC
+PDB
+PHI-base
+PeroxiBase
+PharmGKB
+PlantReactome
+PomBase
+ProteomicsDB
+PseudoCAP
+REBASE
+RGD
+Reactome
+RefSeq
+RefSeq_NT
+SGD
+STRING
+SwissLipids
+TAIR
+TCDB
+TreeFam
+TubercuList
+UCSC
+UniParc
+UniPathway
+UniProtKB-ID
+UniRef100
+UniRef50
+UniRef90
+VEuPathDB
+VGNC
+WBParaSite
+WBParaSite_TRS_PRO
+WormBase
+WormBase_PRO
+WormBase_TRS
+Xenbase
+ZFIN
+dictyBase
+eggNOG
+euHCVdb
+neXtProt