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Develop => main#142

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ialarmedalien merged 20 commits into
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Apr 25, 2026
Merged

Develop => main#142
ialarmedalien merged 20 commits into
mainfrom
develop

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Description of PR purpose/changes

  • Please include a summary of the change and which issue is fixed.
  • Please also include relevant motivation and context.
  • List any dependencies that are required for this change.

Testing Instructions

  • Details for how to test the PR:
  • Tests pass locally and in GitHub Actions

Dev Checklist:

  • My code follows the guidelines at https://sites.google.com/lbl.gov/trussresources/home?authuser=0
  • I have performed a self-review of my own code
  • I have commented my code, particularly in hard-to-understand areas
  • I have made corresponding changes to the documentation
  • My changes generate no new warnings
  • I have added tests that prove my fix is effective or that my feature works
  • New and existing unit tests pass locally with my changes
  • I have run Ruff format to format my code
  • I have run Ruff check and fixed any errors that it uncovered
  • Any dependent changes have been merged and published in downstream modules

Updating Version and Release Notes (if applicable)

ialarmedalien and others added 20 commits April 21, 2026 10:11
Bumps the uv group with 1 update in the / directory: [lxml](https://github.com/lxml/lxml).


Updates `lxml` from 6.0.4 to 6.1.0
- [Release notes](https://github.com/lxml/lxml/releases)
- [Changelog](https://github.com/lxml/lxml/blob/master/CHANGES.txt)
- [Commits](lxml/lxml@lxml-6.0.4...lxml-6.1.0)

---
updated-dependencies:
- dependency-name: lxml
  dependency-version: 6.1.0
  dependency-type: direct:production
  dependency-group: uv
...

Signed-off-by: dependabot[bot] <support@github.com>
Bump lxml from 6.0.4 to 6.1.0 in the uv group across 1 directory
add file handler logging ext
Increase the timeout for Trivy scan results.
Set Trivy scan timeout to 15 minutes
Version bump and a couple of minor fixes
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codecov Bot commented Apr 25, 2026

Codecov Report

❌ Patch coverage is 94.67456% with 9 lines in your changes missing coverage. Please review.
✅ Project coverage is 60.13%. Comparing base (b235fb2) to head (21d3a6f).
⚠️ Report is 22 commits behind head on main.

Files with missing lines Patch % Lines
src/cdm_data_loaders/utils/s3.py 75.00% 6 Missing ⚠️
src/cdm_data_loaders/pipelines/cts_defaults.py 87.50% 2 Missing ⚠️
src/cdm_data_loaders/pipelines/all_the_bacteria.py 98.38% 1 Missing ⚠️
Additional details and impacted files

Impacted file tree graph

@@            Coverage Diff             @@
##             main     #142      +/-   ##
==========================================
+ Coverage   58.53%   60.13%   +1.60%     
==========================================
  Files          64       64              
  Lines        3229     3339     +110     
==========================================
+ Hits         1890     2008     +118     
+ Misses       1339     1331       -8     
Files with missing lines Coverage Δ
src/cdm_data_loaders/utils/cdm_logger.py 100.00% <100.00%> (+32.55%) ⬆️
src/cdm_data_loaders/pipelines/all_the_bacteria.py 97.16% <98.38%> (+1.37%) ⬆️
src/cdm_data_loaders/pipelines/cts_defaults.py 97.36% <87.50%> (-2.64%) ⬇️
src/cdm_data_loaders/utils/s3.py 87.80% <75.00%> (-1.17%) ⬇️

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@ialarmedalien ialarmedalien merged commit 78ce964 into main Apr 25, 2026
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