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Merge branch 'main' into develop

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Merged

Dev to main #129

Merge branch 'main' into develop
8546b1b
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Codecov / codecov/project succeeded Apr 10, 2026 in 0s

56.47% (+3.38%) compared to 9d041cf

View this Pull Request on Codecov

56.47% (+3.38%) compared to 9d041cf

Details

Codecov Report

❌ Patch coverage is 89.13043% with 20 lines in your changes missing coverage. Please review.
✅ Project coverage is 56.47%. Comparing base (9d041cf) to head (8546b1b).

Files with missing lines Patch % Lines
src/cdm_data_loaders/utils/s3.py 88.96% 16 Missing ⚠️
src/cdm_data_loaders/pipelines/ncbi_rest_api.py 86.36% 3 Missing ⚠️
src/cdm_data_loaders/parsers/uniprot/idmapping.py 50.00% 1 Missing ⚠️
Additional details and impacted files

Impacted file tree graph

@@            Coverage Diff             @@
##             main     #129      +/-   ##
==========================================
+ Coverage   53.09%   56.47%   +3.38%     
==========================================
  Files          63       63              
  Lines        3008     3079      +71     
==========================================
+ Hits         1597     1739     +142     
+ Misses       1411     1340      -71     
Files with missing lines Coverage Δ
src/cdm_data_loaders/pipelines/core.py 98.27% <100.00%> (+0.49%) ⬆️
src/cdm_data_loaders/pipelines/cts_defaults.py 100.00% <100.00%> (ø)
src/cdm_data_loaders/parsers/uniprot/idmapping.py 79.54% <50.00%> (ø)
src/cdm_data_loaders/pipelines/ncbi_rest_api.py 82.57% <86.36%> (+0.43%) ⬆️
src/cdm_data_loaders/utils/s3.py 88.96% <88.96%> (ø)

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