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remove use_2to3 for new setuptools #331

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91 changes: 45 additions & 46 deletions setup.py
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Original file line number Diff line number Diff line change
Expand Up @@ -4,77 +4,76 @@

try:
from Cython.Distutils import build_ext

CYTHON = True
except:
CYTHON = False

DEPENDENCIES = ['setuptools']
DEPENDENCIES = ["setuptools"]

# get the version without an import
VERSION = "Undefined"
DOC = ""
inside_doc = False
for line in open('vcf/__init__.py'):
for line in open("vcf/__init__.py"):
if "'''" in line:
inside_doc = not inside_doc
if inside_doc:
DOC += line.replace("'''", "")

if (line.startswith('VERSION')):
if line.startswith("VERSION"):
exec(line.strip())

extras = {}
if CYTHON:
extras['cmdclass'] = {'build_ext': build_ext}
extras['ext_modules'] = [Extension("vcf.cparse", ["vcf/cparse.pyx"])]
extras["cmdclass"] = {"build_ext": build_ext}
extras["ext_modules"] = [Extension("vcf.cparse", ["vcf/cparse.pyx"])]

setup(
name='PyVCF',
packages=['vcf', 'vcf.test'],
scripts=['scripts/vcf_melt', 'scripts/vcf_filter.py',
'scripts/vcf_sample_filter.py'],
author='James Casbon and @jdoughertyii',
author_email='casbon@gmail.com',
description='Variant Call Format (VCF) parser for Python',
name="PyVCF",
packages=["vcf", "vcf.test"],
scripts=["scripts/vcf_melt", "scripts/vcf_filter.py", "scripts/vcf_sample_filter.py"],
author="James Casbon and @jdoughertyii",
author_email="casbon@gmail.com",
description="Variant Call Format (VCF) parser for Python",
long_description=DOC,
test_suite='vcf.test.test_vcf.suite',
test_suite="vcf.test.test_vcf.suite",
install_requires=DEPENDENCIES,
entry_points = {
'vcf.filters': [
'site_quality = vcf.filters:SiteQuality',
'vgq = vcf.filters:VariantGenotypeQuality',
'eb = vcf.filters:ErrorBiasFilter',
'dps = vcf.filters:DepthPerSample',
'avg-dps = vcf.filters:AvgDepthPerSample',
'snp-only = vcf.filters:SnpOnly',
entry_points={
"vcf.filters": [
"site_quality = vcf.filters:SiteQuality",
"vgq = vcf.filters:VariantGenotypeQuality",
"eb = vcf.filters:ErrorBiasFilter",
"dps = vcf.filters:DepthPerSample",
"avg-dps = vcf.filters:AvgDepthPerSample",
"snp-only = vcf.filters:SnpOnly",
]
},
url='https://github.com/jamescasbon/PyVCF',
url="https://github.com/jamescasbon/PyVCF",
version=VERSION,
classifiers = [
'Development Status :: 4 - Beta',
'Intended Audience :: Developers',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: BSD License',
'License :: OSI Approved :: MIT License',
'Operating System :: OS Independent',
'Programming Language :: Cython',
'Programming Language :: Python',
'Programming Language :: Python :: 2',
'Programming Language :: Python :: 2.7',
'Programming Language :: Python :: 3',
'Programming Language :: Python :: 3.4',
'Programming Language :: Python :: 3.5',
'Programming Language :: Python :: 3.6',
'Programming Language :: Python :: Implementation :: CPython',
'Programming Language :: Python :: Implementation :: PyPy',
'Topic :: Scientific/Engineering :: Bio-Informatics',
],
keywords='bioinformatics',
use_2to3=True,
classifiers=[
"Development Status :: 4 - Beta",
"Intended Audience :: Developers",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: BSD License",
"License :: OSI Approved :: MIT License",
"Operating System :: OS Independent",
"Programming Language :: Cython",
"Programming Language :: Python",
"Programming Language :: Python :: 2",
"Programming Language :: Python :: 2.7",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.4",
"Programming Language :: Python :: 3.5",
"Programming Language :: Python :: 3.6",
"Programming Language :: Python :: Implementation :: CPython",
"Programming Language :: Python :: Implementation :: PyPy",
"Topic :: Scientific/Engineering :: Bio-Informatics",
],
keywords="bioinformatics",
include_package_data=True,
package_data = {
'': ['*.vcf', '*.gz', '*.tbi'],
},
package_data={
"": ["*.vcf", "*.gz", "*.tbi"],
},
**extras
)