Github repository for cells

Code base for 2D and (in the future) 3D simulations of deformable particles, or cells

written in c++

src , main and bash

Object-oriented framework, slower but contains hopper and jamming code in src/ directory

Header files forthcoming.

sequential

Sequential c++ code, all single main file with functions defined in the .cpp file.

For the most part, you can compile with g++:

g++ -Wall -O3 sequential/[CODE_NAME_HERE].cpp -o [OUT_NAME_HERE]

Code that needs additional headers

• bidRepulsiveCellJamming.cpp
• bidRepulsiveCellVDOS.cpp

These functions require use of the Eigen header to compute eigenvalues of the dynamical matrix.

To compile, use:

g++ -Wall -O3 -I src sequential/[JAMMING_CODE_NAME_HERE].cpp -o [OUT_NAME_HERE]