ephys-preprocessing

Python code for the preprocessing of ephys data.

We're keeping here also some intro tutorials covering the basics of the library usage and data policies and SOP in the lab.

Requirements

Current aim for this repo is to include all the code for ephys data preprocessing using the spikeinterface library. To run things here, you'll need that to be installed.

Content

The repo is organized as follows:

• /tutorials: introductory notebooks with examples of the library usage
• /scripts: the actual scripts to be used for data preprocessing

TODO:

• define organization of scripts for different data sources
• put there the actual code for preprocessing :)
• make data processing tutorials

Useful resources

• spikeinterface documentation and getting started tutorial
• Kilosort repository, with links for documentation
• Phy documentation
• Intro to manual curation with Phy

Expected future changes

In the future Kilosort will hopefully move to python.