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workflows: Add CI to run STU3 tests #8

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71 changes: 71 additions & 0 deletions .github/workflows/ci-stu3.yml
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name: CI STU3

on:
workflow_dispatch:
push:
branches:
- 'master'
pull_request:

jobs:
build:
if: github.repository == 'incendilabs/plan-executor'

runs-on: ubuntu-24.04
steps:
-
name: Checkout repo
uses: actions/checkout@v4
-
name: Build docker image
run: docker build -t incendi/plan_executor:latest .
-
name: Run tests
run: |
mkdir -p logs html_summaries json_results
docker compose -f docker-compose-stu3.yml up -d spark
docker compose run --rm --no-deps plan_executor ./execute_all.sh 'http://spark:8080/fhir' stu3 'html|json|stdout'
docker compose logs spark > logs/backend.log
-
name: Combine test results
if: ${{ always() }}
run: ./combine-test-results.sh json_results annotations.json
-
name: Attach test results
if: github.event_name != 'pull_request'
uses: yuzutech/annotations-action@v0.5.0
with:
repo-token: "${{ secrets.GITHUB_TOKEN }}"
input: annotations.json
-
name: Archive logs
if: ${{ always() }}
uses: actions/upload-artifact@v4
with:
name: logs-r4-${{ github.sha }}
path: logs/*.log*
-
name: Archive test reports
if: ${{ always() }}
uses: actions/upload-artifact@v4
with:
name: html_summaries-r4-${{ github.sha }}
path: html_summaries/**/*.html
-
name: Archive JSON results
if: ${{ always() }}
uses: actions/upload-artifact@v4
with:
name: json_results-r4-${{ github.sha }}
path: json_results/**/*.json
-
name: Archive annotations file
if: ${{ always() }}
uses: actions/upload-artifact@v4
with:
name: annotations-r4-${{ github.sha }}
path: annotations.json
-
name: Cleanup
if: ${{ always() }}
run: docker compose down
32 changes: 32 additions & 0 deletions docker-compose-stu3.yml
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services:
spark:
container_name: spark
restart: always
image: sparkfhir/spark:stu3-latest
environment:
- StoreSettings__ConnectionString=mongodb://root:secret@mongodb:27017/spark?authSource=admin
- SparkSettings__Endpoint=http://spark:8080/fhir
- ASPNETCORE_URLS=http://+:8080
- ASPNETCORE_HTTP_PORT=8080
ports:
- "8000:8080"
- "8001:8081"
depends_on:
- mongodb
mongodb:
container_name: mongodb
image: sparkfhir/mongo:stu3-latest
environment:
MONGO_INITDB_ROOT_USERNAME: root
MONGO_INITDB_ROOT_PASSWORD: secret
ports:
- "17017:27017"
plan_executor:
container_name: plan_executor
image: incendi/plan_executor:latest
depends_on:
- spark
volumes:
- ./logs:/app/logs:rw
- ./html_summaries:/app/html_summaries:rw
- ./json_results:/app/json_results:rw
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