Analysis of spot dynamics

Data structure

data
├── condition_A
│   ├── coords1.xml
│   ├── coords2.xml
│   ├── coords3.xml
│   ├── ....
│   └── parms.csv
└── condition_B
    ├── coords1.xml
    ├── coords2.xml
    ├── coords3.xml
    ├── ....
    └── parms.csv

Requirements

pip install -r requirements.txt

Run a unique condition:

python run.py data/condition_A

Analysis

• Track length + gap length over the track
• MSD on a single spot (MSD curve (+ log scaled), estimations of alpha and D)
• Average of length, alpha and D
• time-averaged MSD curve on all spots
• VAC
• Gaussianity