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Bdc parser update ddm2#425

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yskale merged 7 commits intoDugModel2.0from
BDC_parser_update_DDM2
Mar 3, 2026
Merged

Bdc parser update ddm2#425
yskale merged 7 commits intoDugModel2.0from
BDC_parser_update_DDM2

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@yskale yskale commented Feb 19, 2026

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@yskale yskale requested a review from YaphetKG February 19, 2026 14:15
@YaphetKG YaphetKG changed the base branch from develop to DugModel2.0 February 20, 2026 17:19
return tree_root.find("./Studies/Study/Configuration/StudyNameEntrez").text

@staticmethod
def parse_study_description_from_gap_exchange_file(filepath: Path) -> str:
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Is this true for all dbgap files? at least for the parsers that inherit this and don't override this method?

I am wondering if the upstream lakefs repository is organized in such a way (i.e there is always a gap exchange file always )

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this is true for BDC as there will be no study level information that we can extract..if no gap exchange file

@yskale yskale requested a review from YaphetKG March 2, 2026 20:14
@yskale yskale merged commit 075e63b into DugModel2.0 Mar 3, 2026
@yskale yskale deleted the BDC_parser_update_DDM2 branch March 3, 2026 14:33
@yskale yskale restored the BDC_parser_update_DDM2 branch March 3, 2026 14:34
@YaphetKG YaphetKG deleted the BDC_parser_update_DDM2 branch March 10, 2026 14:45
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2 participants