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Fixes hellbelly/BS-Snper#10 #11

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Fixes hellbelly/BS-Snper#10 #11

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3 changes: 2 additions & 1 deletion sam_funcs.c
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Original file line number Diff line number Diff line change
Expand Up @@ -184,8 +184,9 @@ int parseBuffer(bam_header_t *header, bam1_t *b, MapRecord* record, unsigned int
if(c->qual < mapqThr)
return 1;
// 6 - CIGAR
record->cigar[0] = '\0';
for (i = 0; i < c->n_cigar; ++i)
sprintf(record->cigar, "%d%c", bam1_cigar(b)[i]>>BAM_CIGAR_SHIFT, "MIDNSHP"[bam1_cigar(b)[i]&BAM_CIGAR_MASK]);
sprintf(record->cigar, "%s%d%c", record->cigar, bam1_cigar(b)[i]>>BAM_CIGAR_SHIFT, "MIDNSHP"[bam1_cigar(b)[i]&BAM_CIGAR_MASK]);
// 10 - SEQ
for(i = 0; i < c->l_qseq; ++i)
record->seqBuf[i] = bam_nt16_rev_table[bam1_seqi(s, i)];
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