Search results

Large genomes fail on bai index

Status: Open.

#316 In harvardinformatics/snparcher;

· tsackton opened on Apr 16, 2026

Unclear callable sites behavior with mixed inputs (gvcf+srr)

Status: Open.

#315 In harvardinformatics/snparcher;

· tsackton opened on Apr 14, 2026

SplitIntervals with subdivision mode interval subdivision creates pathological intervals on fragmented genomes

Status: Open.

#314 In harvardinformatics/snparcher;

· tsackton opened on Apr 14, 2026

Hardcoded memory specifications

Status: Open.

#303 In harvardinformatics/snparcher;

· gwct opened on Apr 6, 2026

[discussion] snparcher CLI

Status: Open.

#287 In harvardinformatics/snparcher;

· pdimens opened on Mar 9, 2026

clam_loci error

Status: Open.

#268 In harvardinformatics/snparcher;

· cnloves opened on Sep 19, 2025

DB2vcf / CombineGVCFs error out with MNPs

Status: Open.

#219 In harvardinformatics/snparcher;

· shelbirussell opened on Sep 4, 2024

restricting variant calls

enhancementNew feature or requestNew feature or request

lowpriorityOn the roadmap, but not likely to be addressed soonOn the roadmap, but not likely to be addressed soon

Status: Open.

#208 In harvardinformatics/snparcher;

· TonyKess opened on Jun 17, 2024

Add snp density visualization to QC module

enhancementNew feature or requestNew feature or request

lowpriorityOn the roadmap, but not likely to be addressed soonOn the roadmap, but not likely to be addressed soon

Status: Open.

#109 In harvardinformatics/snparcher;

· tsackton opened on Jun 5, 2023

Automatically determine correct coverage parameters

enhancementNew feature or requestNew feature or request

lowpriorityOn the roadmap, but not likely to be addressed soonOn the roadmap, but not likely to be addressed soon

Status: Open.

#15 In harvardinformatics/snparcher;

· tsackton opened on Aug 6, 2021