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8 changes: 8 additions & 0 deletions test_project/annotations.tsv
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assembly_accession access_url
GCA_048338725.1 https://ftp.ebi.ac.uk/pub/ensemblorganisms/Sus_scrofa/GCA_048338725.1/ensembl/geneset/2025_08/genes.gff3.gz
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🚫 [annotrieve-validator] reported by reviewdog 🐶
Duplicate assembly_accession

  • GCA_048338725.1 appears more than once; keep at most one row per assembly.

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🚫 [annotrieve-validator] reported by reviewdog 🐶
Duplicate access_url

  • https://ftp.ebi.ac.uk/pub/ensemblorganisms/Sus_scrofa/GCA_048338725.1/ensembl/geneset/2025_08/genes.gff3.gz appears more than once; each row must use a distinct URL.

GCA_044906185.1 https://ftp.ebi.ac.uk/pub/ensemblorganisms/Sus_scrofa/GCA_044906185.1/ensembl/geneset/2025_08/genes.gff3.gz
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🚫 [annotrieve-validator] reported by reviewdog 🐶
Duplicate access_url

  • https://ftp.ebi.ac.uk/pub/ensemblorganisms/Sus_scrofa/GCA_044906185.1/ensembl/geneset/2025_08/genes.gff3.gz appears more than once; each row must use a distinct URL.

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🚫 [annotrieve-validator] reported by reviewdog 🐶
Duplicate annotation file (MD5)

  • checksum 09a3ba67712292763cd684a8f5119fc4 appears more than once; each row must refer to a distinct annotation file.

NOT_A_VALID_ACCESSION https://ftp.ebi.ac.uk/pub/ensemblorganisms/Sus_scrofa/GCA_048338725.1/ensembl/geneset/2025_08/genes.gff3.gz
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🚫 [annotrieve-validator] reported by reviewdog 🐶
Duplicate access_url

  • https://ftp.ebi.ac.uk/pub/ensemblorganisms/Sus_scrofa/GCA_048338725.1/ensembl/geneset/2025_08/genes.gff3.gz appears more than once; each row must use a distinct URL.

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🚫 [annotrieve-validator] reported by reviewdog 🐶
NOT_A_VALID_ACCESSION

  • assembly_accession format invalid (need GCA_/GCF_…): 'NOT_A_VALID_ACCESSION'

GCA_963930625.1 https://example.invalid/nonexistent.gff3.gz
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🚫 [annotrieve-validator] reported by reviewdog 🐶
GCA_963930625.1

  • download failed: HTTPSConnectionPool(host='example.invalid', port=443): Max retries exceeded with url: /nonexistent.gff3.gz (Caused by NameResolutionError("HTTPSConnection(host='example.invalid', port=443): Failed to resolve 'example.invalid' ([Errno -2] Name or service not known)"))

GCA_048338725.1 https://ftp.ebi.ac.uk/pub/ensemblorganisms/Sus_scrofa/GCA_046128825.1/ensembl/geneset/2025_08/genes.gff3.gz
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🚫 [annotrieve-validator] reported by reviewdog 🐶
Duplicate assembly_accession

  • GCA_048338725.1 appears more than once; keep at most one row per assembly.

GCA_040869115.1 https://ftp.ebi.ac.uk/pub/ensemblorganisms/Sus_scrofa/GCA_044906185.1/ensembl/geneset/2025_08/genes.gff3.gz
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🚫 [annotrieve-validator] reported by reviewdog 🐶
Duplicate access_url

  • https://ftp.ebi.ac.uk/pub/ensemblorganisms/Sus_scrofa/GCA_044906185.1/ensembl/geneset/2025_08/genes.gff3.gz appears more than once; each row must use a distinct URL.

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🚫 [annotrieve-validator] reported by reviewdog 🐶
Duplicate annotation file (MD5)

  • checksum 09a3ba67712292763cd684a8f5119fc4 appears more than once; each row must refer to a distinct annotation file.

GCA_000820885.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/820/885/GCA_000820885.1_KLDO_01/GCA_000820885.1_KLDO_01_genomic.gff.gz
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🚫 [annotrieve-validator] reported by reviewdog 🐶
GCA_000820885.1

  • tabix pipeline: [E::hts_idx_push] Invalid record on sequence test #4: end 276483 < begin 276510
    tbx_index_build failed: /tmp/arv_h_6kpfbw0v/pipe.gff.gz

9 changes: 9 additions & 0 deletions test_project/manifest.yaml
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# Copy this folder to <your_project_name>/ and replace values before opening a PR.
provider_name: "Example Lab"
pipeline_method: "Braker3 + manual curation"
pipeline_version: "1.2.0"
project_display_name: "Example community annotations"
description: "Illustrative manifest for the registry layout (not a real dataset)."
# contact_email: "pi@example.org"
# license: "CC-BY-4.0"
# homepage_url: "https://example.org/project"
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