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many ann#12

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apollo994 wants to merge 6 commits into
guigolab:masterfrom
apollo994:master
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many ann#12
apollo994 wants to merge 6 commits into
guigolab:masterfrom
apollo994:master

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github-actions Bot commented May 14, 2026

Registry validation

  • New rows: 1499 valid, 1 invalid
  • Manifest issues: 0
  • Duplicate assemblies (TSV files): 1
  • Duplicate URLs (TSV files): 0
  • Duplicate annotation files (MD5, TSV files): 0
  • Duplicate files vs registry index: 0
  • TSV header/parse errors: 0

Inline annotations on each failing row — open Files changed for details.
Updated on every push.

Comment thread fab/annotations.tsv
GCA_050403525.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/050/403/525/GCA_050403525.1_S_salmonicolor_JCM21900v1/GCA_050403525.1_S_salmonicolor_JCM21900v1_genomic.gff.gz
GCA_035928285.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/035/928/285/GCA_035928285.1_ASM3592828v1/GCA_035928285.1_ASM3592828v1_genomic.gff.gz
GCF_902459505.2 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/459/505/GCF_902459505.2_aGeoSer1.2/GCF_902459505.2_aGeoSer1.2_genomic.gff.gz
GCA_942486035.1 https://ftp.ebi.ac.uk/pub/ensemblorganisms/Porites_lobata/GCA_942486035.1/ensembl/geneset/2023_10/genes.gff3.gz
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🚫 [annotrieve-validator] reported by reviewdog 🐶
Duplicate assembly_accession

  • GCA_942486035.1 appears more than once; keep at most one row per assembly.

Comment thread fab/annotations.tsv
GCA_958449725.1 https://ftp.ebi.ac.uk/pub/ensemblorganisms/Rosa_rugosa/GCA_958449725.1/ensembl/geneset/2024_02/genes.gff3.gz
GCA_946251945.1 https://ftp.ebi.ac.uk/pub/ensemblorganisms/Acronicta_psi/GCA_946251945.1/ensembl/geneset/2023_04/genes.gff3.gz
GCA_038025125.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/038/025/125/GCA_038025125.1_Pcit120373/GCA_038025125.1_Pcit120373_genomic.gff.gz
GCA_942486035.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/942/486/035/GCA_942486035.1_PLOB_v1/GCA_942486035.1_PLOB_v1_genomic.gff.gz
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🚫 [annotrieve-validator] reported by reviewdog 🐶
Duplicate assembly_accession

  • GCA_942486035.1 appears more than once; keep at most one row per assembly.

@apollo994 apollo994 closed this May 15, 2026
Comment thread fab/annotations.tsv
GCA_966185115.1 https://ftp.ebi.ac.uk/pub/ensemblorganisms/Epinotia_pygmaeana/GCA_966185115.1/ensembl/geneset/2025_10/genes.gff3.gz
GCA_036373735.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/036/373/735/GCA_036373735.1_TriCol_Mitrevalab_supernova.polished.1.0/GCA_036373735.1_TriCol_Mitrevalab_supernova.polished.1.0_genomic.gff.gz
GCA_000750935.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/750/935/GCA_000750935.1_DG38/GCA_000750935.1_DG38_genomic.gff.gz
GCF_902167145.1 https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/167/145/GCF_902167145.1_Zm-B73-REFERENCE-NAM-5.0/GCF_902167145.1_Zm-B73-REFERENCE-NAM-5.0_genomic.gff.gz
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🚫 [annotrieve-validator] reported by reviewdog 🐶
GCF_902167145.1

  • tabix pipeline: [E::hts_idx_push] Invalid record on sequence test #2: end 267232 < begin 691776
    tbx_index_build failed: /tmp/arv_h_cal8tax7/pipe.gff.gz

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