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Single-cell post-processing modules: Scanpy, Seurat, Bioconductor

enhancementNew feature or requestNew feature or request

Status: Open.

#333 In getwilds/wilds-wdl-library;

· tefirman opened on Apr 26, 2026

HPC Monthly Test Run Log

testingUpdate involving the test run and/or linting CI/CD of the repoUpdate involving the test run and/or linting CI/CD of the repo

Status: Open.

#324 In getwilds/wilds-wdl-library;

· tefirman opened on Apr 16, 2026

Evaluate WDL version migration strategy (1.0 -> 1.2)

infrastructureRelated to the GitHub repo structure and plumbingRelated to the GitHub repo structure and plumbing

questionFurther information is requestedFurther information is requested

Status: Open.

Task

#319 In getwilds/wilds-wdl-library;

· tefirman opened on Apr 11, 2026

·  

FY26 Q4

ShapeMapper2 module improvements

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#314 In getwilds/wilds-wdl-library;

· tefirman opened on Apr 7, 2026

·  

FY26 Q4

Use EDAM ontology in task metadata

Status: Open.

#312 In getwilds/wilds-wdl-library;

· emjbishop opened on Apr 7, 2026

Comprehensive ww-proteinfold pipeline

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#307 In getwilds/wilds-wdl-library;

· tefirman opened on Apr 2, 2026

·  

FY26 Q4

New pipeline: ww-colabfold-batch

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

Feature

#271 In getwilds/wilds-wdl-library;

· tefirman opened on Mar 11, 2026

New pipeline: ww-bwa-deepvariant

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

Feature

#270 In getwilds/wilds-wdl-library;

· tefirman opened on Mar 11, 2026

New pipeline: ww-bowtie2-bcftools

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

Feature

#269 In getwilds/wilds-wdl-library;

· tefirman opened on Mar 11, 2026

Add test coverage for rmats_post task

good first issueGood for newcomersGood for newcomers

testingUpdate involving the test run and/or linting CI/CD of the repoUpdate involving the test run and/or linting CI/CD of the repo

Status: Open.

Bug

#268 In getwilds/wilds-wdl-library;

· tefirman opened on Mar 11, 2026

Make container image configurable as an input parameter

Status: Open.

#222 In getwilds/wilds-wdl-library;

· jdidion opened on Jan 28, 2026

SRA Module Enhancements

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#207 In getwilds/wilds-wdl-library;

· tefirman opened on Jan 7, 2026