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minor CI #34: Commit 7992db2 pushed by genomewalker
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Remove CLAUDE.md from tracking CI #33: Commit bb1b020 pushed by genomewalker
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Add CLAUDE.md to .gitignore CI #32: Commit 9c91967 pushed by genomewalker
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deconvolve: disable length model when no bimodal signal, remove hardc… CI #31: Commit a8e2764 pushed by genomewalker
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docs: fix encoder architecture, activation, kNN k, batch-size, thread… CI #30: Commit de7ac0b pushed by genomewalker
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docs: remove em dashes, fix --threads default (1 -> 16) CI #29: Commit 319e2ae pushed by genomewalker
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wiki: add concise assembly-baked damage section CI #28: Commit 16c60a7 pushed by genomewalker
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wiki: clean up Methods-and-Model - remove polish, redundancy, trim as… CI #27: Commit 6258192 pushed by genomewalker
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docs: fix min-length default to 1001 (was incorrectly 2500) CI #26: Commit 0955440 pushed by genomewalker
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docs: fix SCG statement in README, mismatch spectrum order in Methods CI #25: Commit 8480955 pushed by genomewalker
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wiki: fix SCG statement - typically single-copy, not definitionally CI #24: Commit 867b973 pushed by genomewalker
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wiki: fix median contamination statistics CI #23: Commit 13b6177 pushed by genomewalker
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wiki: add Tier column to COMEBin table for consistency CI #22: Commit 8064d9f pushed by genomewalker
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docs: update architecture diagram and fix benchmarks CI #21: Commit 3a0bb6d pushed by genomewalker
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benchmarks: add SemiBin2, remove DAS Tool; add per-bin table for Semi… CI #20: Commit 7cd6ac8 pushed by genomewalker
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fix CI: igraph 0.10.x uses flat includes (igraph.h not igraph/igraph.h) CI #19: Commit 9a4fd2e pushed by genomewalker
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cmake: add diagnostic messages for igraph paths CI #18: Commit da8b054 pushed by genomewalker
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cmake: fix igraph include path for cmake 3.31 (FetchContent_Populate … CI #17: Commit 4788e11 pushed by genomewalker
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track missing source files: marker_index, bin_confidence, partition_c… CI #16: Commit cf513f4 pushed by genomewalker
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deconvolve: assembled sequence is wrong; no-modern-reads works; polis… CI #15: Commit 1ca61f1 pushed by genomewalker
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methods: assembly damage artifact — suppression scaling table, encode… CI #14: Commit 1c268d8 pushed by genomewalker
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benchmarks: simplify comparison table to winning AMBER config only CI #13: Commit 84501be pushed by genomewalker
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benchmarks: update COMEBin to 9/8/8 (top 3 of 5 single-BAM reruns, me… CI #12: Commit a82e663 pushed by genomewalker
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polish: register amber polish as CLI subcommand CI #11: Commit c296a61 pushed by genomewalker
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assembly damage artifact: explain baked-in damage + document amber po… CI #10: Commit e90926a pushed by genomewalker
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