Merged
Conversation
Collaborator
Michal-Babins
commented
Aug 12, 2025
- Added ability to write out pairwise distance matrix to h5 file
- Refactored io functions to be cleaner
- Changed println statements to logging
…better traceability
…rsion functionalities into distinct modules. Implement save and load functions for HDF5 format, including error handling and metadata attributes. Add binary format saving functionality. Enhance CSV saving capabilities for matrices with IDs and similarity pairs. Introduce conversion functions for CSV, FASTA, and JSON formats, with placeholders for future implementation.
thanhleviet
approved these changes
Aug 26, 2025
thanhleviet
left a comment
There was a problem hiding this comment.
too many commits per PR. Merge for now but will separate this rust code to a new repo
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.