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add quast rule #99

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Merged
bgruening merged 4 commits into from
Jan 26, 2026
Merged

add quast rule #99

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63d5fee
add quast rule
bgruening Dec 20, 2025
9b13252
fix lint
bgruening Dec 20, 2025
1292abe
Apply suggestion from @bgruening
bgruening Dec 22, 2025
3b61725
Merge branch 'main' into quast
bgruening Dec 22, 2025
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8 changes: 8 additions & 0 deletions tools.yml
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Expand Up @@ -2364,6 +2364,14 @@ tools:
toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/.*:
cores: 10
mem: 12
rules:
- id: tpvdb_quast_memory
# Quast has a vastly greater memory requirement when it generates alignments between scaffolds and a user-
# provided reference. This is particularly true if the ref genome is large.
if: |
helpers.job_args_match(job, app, {"assembly": {"ref": {"use_ref": "true"}}, "large": True})
mem: 250

toolshed.g2.bx.psu.edu/repos/iuc/raven/raven/.*:
# FIXME: needs mem
cores: 16
Expand Down