Add coverage examples for Cobertura, JaCoCo and Phpunit + Clover.

.github/workflows/java.yml

@@ -0,0 +1,66 @@
+name: Java Tests
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+  workflow_dispatch:
+
+defaults:
+  run:
+    working-directory: java-example
+
+jobs:
+  test:
+    name: JUnit 5 + JaCoCo Coverage
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Setup Java
+        uses: actions/setup-java@v4
+        with:
+          java-version: "17"
+          distribution: "temurin"
+          cache: "maven"
+
+      - name: Run tests with coverage
+        run: mvn clean verify -Dmaven.test.failure.ignore=true
+
+      # Upload JUnit test results to Gaffer
+      # Skip on Dependabot PRs (no access to secrets)
+      - name: Upload JUnit results to Gaffer
+        if: always() && github.actor != 'dependabot[bot]'
+        uses: gaffer-sh/gaffer-uploader@v0.4.0
+        with:
+          gaffer_upload_token: ${{ secrets.GAFFER_UPLOAD_TOKEN }}
+          report_path: java-example/target/surefire-reports/
+          commit_sha: ${{ github.event.pull_request.head.sha || github.sha }}
+          branch: ${{ github.head_ref || github.ref_name }}
+          test_framework: junit
+          test_suite: junit-results
+
+      # Upload JaCoCo coverage to Gaffer
+      - name: Upload JaCoCo coverage to Gaffer
+        if: always() && github.actor != 'dependabot[bot]'
+        uses: gaffer-sh/gaffer-uploader@v0.4.0
+        with:
+          gaffer_upload_token: ${{ secrets.GAFFER_UPLOAD_TOKEN }}
+          report_path: java-example/target/site/jacoco/jacoco.xml
+          commit_sha: ${{ github.event.pull_request.head.sha || github.sha }}
+          branch: ${{ github.head_ref || github.ref_name }}
+          test_framework: junit
+          test_suite: jacoco-coverage
+
+      # Store artifacts for parser development
+      - name: Upload test artifacts
+        if: always()
+        uses: actions/upload-artifact@v4
+        with:
+          name: java-reports-${{ github.sha }}
+          path: |
+            java-example/target/surefire-reports/
+            java-example/target/site/jacoco/
+          retention-days: 7

.github/workflows/phpunit.yml

@@ -0,0 +1,86 @@
+name: PHPUnit Tests
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+  workflow_dispatch:
+
+defaults:
+  run:
+    working-directory: php-example
+
+jobs:
+  test:
+    name: PHPUnit + Clover Coverage
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+
+      - name: Setup PHP
+        uses: shivammathur/setup-php@v2
+        with:
+          php-version: "8.2"
+          coverage: pcov
+          tools: composer:v2
+
+      - name: Get Composer cache directory
+        id: composer-cache
+        run: echo "dir=$(composer config cache-files-dir)" >> $GITHUB_OUTPUT
+
+      - name: Cache Composer dependencies
+        uses: actions/cache@v4
+        with:
+          path: ${{ steps.composer-cache.outputs.dir }}
+          key: ${{ runner.os }}-composer-${{ hashFiles('php-example/composer.json') }}
+          restore-keys: ${{ runner.os }}-composer-
+
+      - name: Install dependencies
+        run: composer install --prefer-dist --no-progress
+
+      - name: Create reports directory
+        run: mkdir -p reports
+
+      - name: Run tests with coverage
+        run: |
+          vendor/bin/phpunit \
+            --coverage-clover reports/clover.xml \
+            --coverage-html reports/htmlcov \
+            --log-junit reports/phpunit-results.xml
+        continue-on-error: true
+
+      # Upload PHPUnit test results to Gaffer
+      # Skip on Dependabot PRs (no access to secrets)
+      - name: Upload PHPUnit results to Gaffer
+        if: always() && github.actor != 'dependabot[bot]'
+        uses: gaffer-sh/gaffer-uploader@v0.4.0
+        with:
+          gaffer_upload_token: ${{ secrets.GAFFER_UPLOAD_TOKEN }}
+          report_path: php-example/reports/phpunit-results.xml
+          commit_sha: ${{ github.event.pull_request.head.sha || github.sha }}
+          branch: ${{ github.head_ref || github.ref_name }}
+          test_framework: phpunit
+          test_suite: phpunit-results
+
+      # Upload Clover coverage to Gaffer
+      - name: Upload Clover coverage to Gaffer
+        if: always() && github.actor != 'dependabot[bot]'
+        uses: gaffer-sh/gaffer-uploader@v0.4.0
+        with:
+          gaffer_upload_token: ${{ secrets.GAFFER_UPLOAD_TOKEN }}
+          report_path: php-example/reports/clover.xml
+          commit_sha: ${{ github.event.pull_request.head.sha || github.sha }}
+          branch: ${{ github.head_ref || github.ref_name }}
+          test_framework: phpunit
+          test_suite: phpunit-coverage
+
+      # Store artifacts for parser development
+      - name: Upload test artifacts
+        if: always()
+        uses: actions/upload-artifact@v4
+        with:
+          name: phpunit-reports-${{ github.sha }}
+          path: php-example/reports/
+          retention-days: 7

.github/workflows/pytest.yml

@@ -32,8 +32,14 @@ jobs:
       - name: Create reports directory
         run: mkdir -p reports
 
-      - name: Run tests with HTML output
-        run: pytest --html=reports/pytest-report.html --self-contained-html
+      - name: Run tests with HTML output and coverage
+        run: |
+          pytest \
+            --html=reports/pytest-report.html \
+            --self-contained-html \
+            --cov=src \
+            --cov-report=xml:reports/coverage.xml \
+            --cov-report=html:reports/htmlcov
         continue-on-error: true
 
       # Upload via GitHub Action (recommended)
@@ -49,6 +55,18 @@ jobs:
           test_framework: pytest
           test_suite: pytest-html
 
+      # Upload Cobertura coverage report
+      - name: Upload coverage to Gaffer
+        if: always() && github.actor != 'dependabot[bot]'
+        uses: gaffer-sh/gaffer-uploader@v0.4.0
+        with:
+          gaffer_upload_token: ${{ secrets.GAFFER_UPLOAD_TOKEN }}
+          report_path: pytest-example/reports/coverage.xml
+          commit_sha: ${{ github.event.pull_request.head.sha || github.sha }}
+          branch: ${{ github.head_ref || github.ref_name }}
+          test_framework: pytest
+          test_suite: pytest-coverage
+
       # Alternative: Upload via curl (for documentation/reference)
       # - name: Upload via curl (example)
       #   if: always() && github.actor != 'dependabot[bot]'
@@ -71,4 +89,4 @@ jobs:
         with:
           name: pytest-reports-${{ github.sha }}
           path: pytest-example/reports/
-          retention-days: 30
+          retention-days: 7

README.md

@@ -2,7 +2,7 @@
 
 Example test projects demonstrating [Gaffer](https://gaffer.sh) integration for various test frameworks.
 
-Parser Check: December 25 2025 - 1:10PM - Merry Christmas
+Parser Check: January 22 2026 - 8:16am
 
 ## Examples
 

java-example/.gitignore

@@ -0,0 +1,22 @@
+# Maven
+target/
+pom.xml.tag
+pom.xml.releaseBackup
+pom.xml.versionsBackup
+pom.xml.next
+release.properties
+dependency-reduced-pom.xml
+buildNumber.properties
+.mvn/timing.properties
+.mvn/wrapper/maven-wrapper.jar
+
+# IDE
+.idea/
+*.iml
+*.ipr
+*.iws
+.project
+.classpath
+.settings/
+.vscode/
+*.swp

java-example/README.md

@@ -0,0 +1,46 @@
+# Java Example (JUnit 5 + JaCoCo Coverage)
+
+This example demonstrates how to integrate Gaffer with JUnit 5 test reports and JaCoCo coverage reports.
+
+## Overview
+
+This project uses:
+- **JUnit 5** (Jupiter) for testing
+- **JaCoCo** for code coverage
+- **Maven** as the build tool
+
+## Requirements
+
+- Java 17+
+- Maven 3.8+
+
+## Local Development
+
+```bash
+# Run tests with coverage
+mvn clean test
+
+# View coverage report
+open target/site/jacoco/index.html
+```
+
+## Test Reports
+
+After running tests, reports are generated in:
+- `target/surefire-reports/*.xml` - JUnit XML test results
+- `target/site/jacoco/jacoco.xml` - JaCoCo coverage XML
+- `target/site/jacoco/index.html` - HTML coverage report
+
+## CI Integration
+
+The GitHub Actions workflow (`.github/workflows/java.yml`):
+1. Runs Maven test with JaCoCo coverage
+2. Generates JUnit test results and JaCoCo coverage
+3. Uploads both reports to Gaffer
+
+## Coverage Formats
+
+JaCoCo generates multiple formats:
+- **JaCoCo XML** - Parsed by Gaffer for coverage metrics
+- **JaCoCo CSV** - Machine-readable summary
+- **HTML** - Human-readable coverage browser

java-example/pom.xml

@@ -0,0 +1,85 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project xmlns="http://maven.apache.org/POM/4.0.0"
+         xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+    <modelVersion>4.0.0</modelVersion>
+
+    <groupId>com.example</groupId>
+    <artifactId>gaffer-java-example</artifactId>
+    <version>1.0.0</version>
+    <packaging>jar</packaging>
+
+    <name>Gaffer Java Example</name>
+    <description>Gaffer JUnit 5 example with JaCoCo coverage reporting</description>
+
+    <properties>
+        <maven.compiler.source>17</maven.compiler.source>
+        <maven.compiler.target>17</maven.compiler.target>
+        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
+        <junit.version>5.10.2</junit.version>
+        <jacoco.version>0.8.12</jacoco.version>
+    </properties>
+
+    <dependencies>
+        <!-- JUnit 5 -->
+        <dependency>
+            <groupId>org.junit.jupiter</groupId>
+            <artifactId>junit-jupiter</artifactId>
+            <version>${junit.version}</version>
+            <scope>test</scope>
+        </dependency>
+    </dependencies>
+
+    <build>
+        <plugins>
+            <!-- Compiler Plugin -->
+            <plugin>
+                <groupId>org.apache.maven.plugins</groupId>
+                <artifactId>maven-compiler-plugin</artifactId>
+                <version>3.12.1</version>
+                <configuration>
+                    <source>17</source>
+                    <target>17</target>
+                </configuration>
+            </plugin>
+
+            <!-- Surefire Plugin (for running tests) -->
+            <plugin>
+                <groupId>org.apache.maven.plugins</groupId>
+                <artifactId>maven-surefire-plugin</artifactId>
+                <version>3.2.5</version>
+                <configuration>
+                    <!-- Generate JUnit XML reports -->
+                    <reportsDirectory>${project.build.directory}/surefire-reports</reportsDirectory>
+                </configuration>
+            </plugin>
+
+            <!-- JaCoCo Plugin (for coverage) -->
+            <plugin>
+                <groupId>org.jacoco</groupId>
+                <artifactId>jacoco-maven-plugin</artifactId>
+                <version>${jacoco.version}</version>
+                <executions>
+                    <!-- Prepare agent for coverage collection -->
+                    <execution>
+                        <id>prepare-agent</id>
+                        <goals>
+                            <goal>prepare-agent</goal>
+                        </goals>
+                    </execution>
+                    <!-- Generate coverage report after tests -->
+                    <execution>
+                        <id>report</id>
+                        <phase>verify</phase>
+                        <goals>
+                            <goal>report</goal>
+                        </goals>
+                        <configuration>
+                            <outputDirectory>${project.build.directory}/site/jacoco</outputDirectory>
+                        </configuration>
+                    </execution>
+                </executions>
+            </plugin>
+        </plugins>
+    </build>
+</project>