Skip to content

fix TypeError in format_chunksize, y-axis scale of knee-plot #17

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
ChangqingW wants to merge 2 commits into
base: master
Choose a base branch
from
Open

fix TypeError in format_chunksize, y-axis scale of knee-plot #17

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
081d477
fix TypeError in format_chunksize
ChangqingW Jan 13, 2026
a336342
Fix y-axis scale of knee-plot
ChangqingW Jan 14, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion LR-splitpipe/demultiplex.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -329,7 +329,7 @@ def main():
delete_input = args.delete_input

def format_chunksize(c):
if '**' in c:
if isinstance(c, str) and '**' in c:
i, j = c.split('**')
i = float(i)
j = float(j)
Expand Down
1 change: 1 addition & 0 deletions LR-splitpipe/plotting.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -131,6 +131,7 @@ def plot_knee_plot(df, oprefix, kind):
linewidth=2)
ax = plt.gca()
ax.set_xscale('log')
ax.set_yscale('log')
ax.set_xlabel('Ranked cells by # UMIs')
ax.set_ylabel('# UMIs (logscale)')
ax.set_title(kind)
Expand Down