Fixed git revert mistakes#28

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fwzhao wants to merge 7 commits intoepigen:masterfrom

fwzhao:dev_fz_refix

Commits on Nov 5, 2020

fixed bug in dirname
Fangwen Zhao
committed
fixed atac yaml
Fangwen Zhao
committed

Commits on Nov 6, 2020

update to atac pipeline
Fangwen Zhao
committed

Commits on Mar 16, 2021

manually resetting to previous commit (merge 9026b1629... broke things)
Fangwen Zhao
committed
re-adding changes from commits since bad merge - os.dirname
Fangwen Zhao
committed
fixed additional mistake in os.dirname
Fangwen Zhao
committed
re-added spp line
Fangwen Zhao
committed