SCpubr Reference Manual

This repository contains the source for the documentation book of SCpubr, an R package for publication-ready single-cell visualizations.

Structure

• Getting started: Installation, dataset, quickstart, shared features
• Function reference: All SCpubr functions, grouped by analysis type
• Workflows: End-to-end analysis examples
• Reference & Appendix: FAQ, troubleshooting, citation, and more

Building the Book

To render the book locally, you need Quarto and R with all dependencies installed:

quarto preview

Or build static HTML:

quarto render

Contributing

Contributions are welcome! Please open issues or pull requests for suggestions, corrections, or new content.

License

Documentation is licensed under GPLv3.