chore: Upgrade Python requirements

[edx-requirements-bot]

Python requirements update. Please review the changelogs for the upgraded packages.

Deleted obsolete pull_requests:
#216

[edx-requirements-bot]

List of packages in the PR without any issue.

• asgiref changes from 3.9.1 to 3.9.2
• click changes from 8.2.1 to 8.3.0
• coverage[toml] changes from 7.10.6 to 7.10.7
• lxml[html-clean] changes from 6.0.1 to 6.0.2
• psutil changes from 7.0.0 to 7.1.0
• pymongo changes from 4.14.1 to 4.15.1
• pynacl changes from 1.5.0 to 1.6.0
• secretstorage changes from 3.3.3 to 3.4.0

[edx-requirements-bot]

These Packages need manual review..

• [MAJOR] cryptography changes from 45.0.7 to 46.0.1

[github-actions]

Coverage report

This PR does not seem to contain any modification to coverable code.

[santhosh-apphelix-2u]

Updates

• cryptography: 45.0.7 → 46.0.1

Merge Justification

• No direct usage of the cryptography package; only used indirectly via pyjwt[crypto].
• No deprecated APIs in current usage that would break with the upgrade.
• Project’s Python version (>= 3.8) is compatible with cryptography v46.0.1.
• Incorporates latest security patches.
• Minimal and low-risk change.