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@eastgenomics

East Genomics

Bringing together genomic medicine across the East Midlands and East of England

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  1. eggd_tso500 eggd_tso500 Public

    Runs the Illumina TSO500 local analysis app.

    Shell 5 2

  2. athena athena Public

    Provides HTML reports with detailed coverage analysis for clinical NGS data.

    HTML 5 2

  3. eggd_mosdepth eggd_mosdepth Public

    mosdepth (DNAnexus Platform App)

    Shell 4

  4. Ploutos Ploutos Public archive

    Code for the DNAnexus billing project.

    Python 4

  5. eggd_staraligner eggd_staraligner Public

    Shell 4

  6. eggd_generate_variant_workbook eggd_generate_variant_workbook Public

    DNAnexus app for generating xlsx variant workbooks

    Python 3

Repositories

Showing 10 of 279 repositories
  • eggd_generate_variant_workbook Public

    DNAnexus app for generating xlsx variant workbooks

    eastgenomics/eggd_generate_variant_workbook’s past year of commit activity
    Python 3 0 14 0 Updated Feb 27, 2026
  • trendyQC Public

    Django app for monitoring trends in MultiQC data

    eastgenomics/trendyQC’s past year of commit activity
    Python 2 MIT 0 28 1 Updated Feb 27, 2026
  • eggd_contaminant_detector Public

    DNANexus app for cross-sample contamination detection

    eastgenomics/eggd_contaminant_detector’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Feb 27, 2026
  • eggd_conductor Public

    DNAnexus app for automated analysis

    eastgenomics/eggd_conductor’s past year of commit activity
    Python 1 MIT 1 25 0 Updated Feb 27, 2026
  • eggd_conductor_configs Public

    Repository of eggd_conductor app and assay config files

    eastgenomics/eggd_conductor_configs’s past year of commit activity
    0 0 8 1 Updated Feb 27, 2026
  • RD_requests Public

    DNAnexus app to generate Excel workbook from GEL RD WGS output

    eastgenomics/RD_requests’s past year of commit activity
    Python 0 MIT 2 1 7 Updated Feb 27, 2026
  • medicover_aws Public

    Code to parse Mediover DSS case JSONs for importing to INCA database

    eastgenomics/medicover_aws’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 27, 2026
  • code_school Public
    eastgenomics/code_school’s past year of commit activity
    HTML 3 1 0 3 Updated Feb 26, 2026
  • eggd_artemis Public

    Creates download urls for files required and outpus in a text file to be shared with the scientists

    eastgenomics/eggd_artemis’s past year of commit activity
    Python 0 0 9 1 Updated Feb 26, 2026
  • eggd_dias_single_workflow Public

    Workflow definition for Dias single

    eastgenomics/eggd_dias_single_workflow’s past year of commit activity
    2 0 0 0 Updated Feb 26, 2026
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