Update sphinx_gallery to 0.11.0

[pyup-bot]

This PR updates sphinx_gallery from 0.9.0 to 0.11.0.

Changelog

0.11.0

-------

In this version, the "Out:" prefix applied to code outputs is now created from
CSS pseudo-elements instead of additional real text. For more details, see
`896 <https://github.com/sphinx-gallery/sphinx-gallery/pull/896>`__.

**Implemented enhancements:**

Nesting gallery sections (i.e. gallery subfolders) was implemented in`904 <https://github.com/sphinx-gallery/sphinx-gallery/pull/904>`__. This feature can be disabled (see config option ``nested_sections`` in the documentation) if the previous behaviour is prefered (`alexisthual <https://github.com/alexisthual>`__)

Tooltips now overlay gallery items `commit 36166cd <https://github.com/sphinx-gallery/sphinx-gallery/pull/944/commits/36166cd2fc2b43ecbd585654cfe8745f3a1b3f64>`__. Custom CSS might need to be adapted (`alexisthual <https://github.com/alexisthual>`__).

-  Problem in section and example title level in subgalleries `935 <https://github.com/sphinx-gallery/sphinx-gallery/issues/935>`__
-  Add ability to write nested ``index.rst`` `855 <https://github.com/sphinx-gallery/sphinx-gallery/issues/855>`__
-  Optional usage of ``module`` instead of ``module_short`` when doing backreferencing `950 <https://github.com/sphinx-gallery/sphinx-gallery/pull/950>`__ (`ExtremOPS <https://github.com/ExtremOPS>`__)
-  ENH: Better dark mode support `948 <https://github.com/sphinx-gallery/sphinx-gallery/pull/948>`__ (`larsoner <https://github.com/larsoner>`__)
-  Store API reference examples thumbnails in common div `946 <https://github.com/sphinx-gallery/sphinx-gallery/pull/946>`__ (`alexisthual <https://github.com/alexisthual>`__)
-  Add flag to ignore code blocks in Python source parser `941 <https://github.com/sphinx-gallery/sphinx-gallery/pull/941>`__ (`guberti <https://github.com/guberti>`__)
-  Improve Jupyter notebook converter’s handling of code blocks `940 <https://github.com/sphinx-gallery/sphinx-gallery/pull/940>`__ (`guberti <https://github.com/guberti>`__)
-  [MRG] Changelog regarding nested sections `926 <https://github.com/sphinx-gallery/sphinx-gallery/pull/926>`__ (`alexisthual <https://github.com/alexisthual>`__)
-  Possibility to exclude implicit backreferences `908 <https://github.com/sphinx-gallery/sphinx-gallery/pull/908>`__ (`StefRe <https://github.com/StefRe>`__)
-  [MRG] Handle nested structures `904 <https://github.com/sphinx-gallery/sphinx-gallery/pull/904>`__ (`alexisthual <https://github.com/alexisthual>`__)
-  Use pseudo-elements for ‘Out:’ prefixing `896 <https://github.com/sphinx-gallery/sphinx-gallery/pull/896>`__ (`QuLogic <https://github.com/QuLogic>`__)
-  FIX: Fix for latest pytest `894 <https://github.com/sphinx-gallery/sphinx-gallery/pull/894>`__ (`larsoner <https://github.com/larsoner>`__)
-  Config capture_repr on file-by-file basis `891 <https://github.com/sphinx-gallery/sphinx-gallery/pull/891>`__ (`StefRe <https://github.com/StefRe>`__)

**Fixed bugs:**

We now display gallery items using CSS grid instead of  ``float`` property `906 <https://github.com/sphinx-gallery/sphinx-gallery/pull/906>`__, see `migration guide <https://github.com/sphinx-gallery/sphinx-gallery/pull/906#issuecomment-1019542067>`__ to adapt custom CSS for thumbnails (`alexisthual <https://github.com/alexisthual>`__)

-  BUG: Hotfix for docopts_url `980 <https://github.com/sphinx-gallery/sphinx-gallery/pull/980>`__ (`larsoner <https://github.com/larsoner>`__)
-  BUG: Fix bug with clicking examples `973 <https://github.com/sphinx-gallery/sphinx-gallery/pull/973>`__ (`larsoner <https://github.com/larsoner>`__)
-  Remove test examples for seaborn warning `971 <https://github.com/sphinx-gallery/sphinx-gallery/pull/971>`__ (`lesteve <https://github.com/lesteve>`__)
-  Fix typo `970 <https://github.com/sphinx-gallery/sphinx-gallery/pull/970>`__ (`tkoyama010 <https://github.com/tkoyama010>`__)
-  Avoid matplotlib warnings in seaborn reset_module `969 <https://github.com/sphinx-gallery/sphinx-gallery/pull/969>`__ (`lesteve <https://github.com/lesteve>`__)
-  Fix Tensorflow/Abseil compatibility `961 <https://github.com/sphinx-gallery/sphinx-gallery/pull/961>`__ (`guberti <https://github.com/guberti>`__)
-  syntax error fix in sphinx_gallery.downloads `951 <https://github.com/sphinx-gallery/sphinx-gallery/pull/951>`__ (`photoniker <https://github.com/photoniker>`__)
-  Merge toctrees containing subcategories indices and examples without … `944 <https://github.com/sphinx-gallery/sphinx-gallery/pull/944>`__ (`alexisthual <https://github.com/alexisthual>`__)
-  Fix rendering of embedded URIs in Python notebooks `943 <https://github.com/sphinx-gallery/sphinx-gallery/pull/943>`__ (`guberti <https://github.com/guberti>`__)
-  FIX: Fix for dep `938 <https://github.com/sphinx-gallery/sphinx-gallery/pull/938>`__ (`larsoner <https://github.com/larsoner>`__)
-  Fix typos `934 <https://github.com/sphinx-gallery/sphinx-gallery/pull/934>`__ (`kianmeng <https://github.com/kianmeng>`__)
-  MAINT: Fix CIs `932 <https://github.com/sphinx-gallery/sphinx-gallery/pull/932>`__ (`larsoner <https://github.com/larsoner>`__)
-  MAINT: Use -nWT –keep-going on Azure `924 <https://github.com/sphinx-gallery/sphinx-gallery/pull/924>`__ (`larsoner <https://github.com/larsoner>`__)
-  Ensures right builder conifg `922 <https://github.com/sphinx-gallery/sphinx-gallery/pull/922>`__ (`ExtremOPS <https://github.com/ExtremOPS>`__)
-  MAINT: Fix CIs `920 <https://github.com/sphinx-gallery/sphinx-gallery/pull/920>`__ (`larsoner <https://github.com/larsoner>`__)
-  MAINT: Clean up namespace `917 <https://github.com/sphinx-gallery/sphinx-gallery/pull/917>`__ (`larsoner <https://github.com/larsoner>`__)
-  FIX: Azure `915 <https://github.com/sphinx-gallery/sphinx-gallery/pull/915>`__ (`larsoner <https://github.com/larsoner>`__)
-  [WIP] Bugfix missing parent div for mini gallery `914 <https://github.com/sphinx-gallery/sphinx-gallery/pull/914>`__ (`alexisthual <https://github.com/alexisthual>`__)
-  Honor show_signature `909 <https://github.com/sphinx-gallery/sphinx-gallery/pull/909>`__ (`jschueller <https://github.com/jschueller>`__)
-  Css grid for thumbnails `906 <https://github.com/sphinx-gallery/sphinx-gallery/pull/906>`__ (`alexisthual <https://github.com/alexisthual>`__)
-  Fix matplotlib intersphinx url `902 <https://github.com/sphinx-gallery/sphinx-gallery/pull/902>`__ (`StefRe <https://github.com/StefRe>`__)
-  FIX: Pin pyvista `901 <https://github.com/sphinx-gallery/sphinx-gallery/pull/901>`__ (`larsoner <https://github.com/larsoner>`__)
-  Fix matplotlib resetter \_reset_matplotlib `890 <https://github.com/sphinx-gallery/sphinx-gallery/pull/890>`__ (`StefRe <https://github.com/StefRe>`__)
-  Fix “Out” layout for pydata-sphinx-theme `886 <https://github.com/sphinx-gallery/sphinx-gallery/pull/886>`__ (`timhoffm <https://github.com/timhoffm>`__)

**Documentation updates**

-  added RADIS in Who uses Sphinx-gallery ? `979 <https://github.com/sphinx-gallery/sphinx-gallery/pull/979>`__ (`erwanp <https://github.com/erwanp>`__)
-  add Tonic to list of sphinx-gallery users `972 <https://github.com/sphinx-gallery/sphinx-gallery/pull/972>`__ (`biphasic <https://github.com/biphasic>`__)
-  Add Apache TVM to user projects list `942 <https://github.com/sphinx-gallery/sphinx-gallery/pull/942>`__ (`guberti <https://github.com/guberti>`__)
-  DOC: fix rst link syntax in changelog `925 <https://github.com/sphinx-gallery/sphinx-gallery/pull/925>`__ (`GaelVaroquaux <https://github.com/GaelVaroquaux>`__)
-  add GitHub URL for PyPi `923 <https://github.com/sphinx-gallery/sphinx-gallery/pull/923>`__ (`andriyor <https://github.com/andriyor>`__)
-  Add Biotite to list of user projects `919 <https://github.com/sphinx-gallery/sphinx-gallery/pull/919>`__ (`padix-key <https://github.com/padix-key>`__)
-  MAINT: Remove LooseVersion `916 <https://github.com/sphinx-gallery/sphinx-gallery/pull/916>`__ (`larsoner <https://github.com/larsoner>`__)
-  DOC Fix example “Identifying function names in a script” `903 <https://github.com/sphinx-gallery/sphinx-gallery/pull/903>`__ (`StefRe <https://github.com/StefRe>`__)
-  DOC Update docs for Adding mini-galleries for API documentation `899 <https://github.com/sphinx-gallery/sphinx-gallery/pull/899>`__ (`StefRe <https://github.com/StefRe>`__)
-  Add PyVista examples! `888 <https://github.com/sphinx-gallery/sphinx-gallery/pull/888>`__ (`banesullivan <https://github.com/banesullivan>`__)
-  Fix a few links in project lists `883 <https://github.com/sphinx-gallery/sphinx-gallery/pull/883>`__ (`ixjlyons <https://github.com/ixjlyons>`__)

**Closed issues:**

-  Matplotlib warnings in seaborn example: “Trying to register the cmap which already exists” `968 <https://github.com/sphinx-gallery/sphinx-gallery/issues/968>`__
-  reference_url failure in sphinx version > 5 `967 <https://github.com/sphinx-gallery/sphinx-gallery/issues/967>`__
-  Send feedback `963 <https://github.com/sphinx-gallery/sphinx-gallery/issues/963>`__
-  disable download buttons `949 <https://github.com/sphinx-gallery/sphinx-gallery/issues/949>`__
-  Specify Target of ``reference_url`` `947 <https://github.com/sphinx-gallery/sphinx-gallery/issues/947>`__
-  Display bug for examples mentioning a given API reference `945 <https://github.com/sphinx-gallery/sphinx-gallery/issues/945>`__
-  Subfolder Examples appearing in main TOC `939 <https://github.com/sphinx-gallery/sphinx-gallery/issues/939>`__
-  Sphinx-gallery generating huge rst files `929 <https://github.com/sphinx-gallery/sphinx-gallery/issues/929>`__
-  Broken plot links if sphinx uses ``htmldir`` `921 <https://github.com/sphinx-gallery/sphinx-gallery/issues/921>`__
-  Distorted gallery overview `918 <https://github.com/sphinx-gallery/sphinx-gallery/issues/918>`__
-  mini-gallery not shown in grid `911 <https://github.com/sphinx-gallery/sphinx-gallery/issues/911>`__
-  0.10.1: pep517 build warnings `907 <https://github.com/sphinx-gallery/sphinx-gallery/issues/907>`__
-  Make thumbnails grid- and flexbox-compatible `905 <https://github.com/sphinx-gallery/sphinx-gallery/issues/905>`__
-  DOC: Example “Identifying function names in a script” `900 <https://github.com/sphinx-gallery/sphinx-gallery/issues/900>`__
-  Limit adding mini-galleries for API docs to explicitly referred to items only `898 <https://github.com/sphinx-gallery/sphinx-gallery/issues/898>`__
-  Documentation “Add mini-galleries for API documentation” `897 <https://github.com/sphinx-gallery/sphinx-gallery/issues/897>`__
-  TestLoggingTee failing pytest v7.0.0rc1 `893 <https://github.com/sphinx-gallery/sphinx-gallery/issues/893>`__
-  Resetting matplotlib module `889 <https://github.com/sphinx-gallery/sphinx-gallery/issues/889>`__
-  Thumbnail for non plot examples `887 <https://github.com/sphinx-gallery/sphinx-gallery/issues/887>`__
-  Looking for backrefrences “..examples” files instead of “.examples” files `885 <https://github.com/sphinx-gallery/sphinx-gallery/issues/885>`__
-  Build gallery from .ipynb files only `882 <https://github.com/sphinx-gallery/sphinx-gallery/issues/882>`__
-  Examples showing at the top instead of interlaced in-between every class `876 <https://github.com/sphinx-gallery/sphinx-gallery/issues/876>`__
-  Creating API mini-gallery using autosummary recursive option `797 <https://github.com/sphinx-gallery/sphinx-gallery/issues/797>`__

**Merged pull requests:**

0.10.1

-------

Support for Python 3.6 dropped in this release. Requirement is Python >=3.7.

**Implemented enhancements:**

-  Feature Request: ``reset_modules`` to be applied after each or all examples `866 <https://github.com/sphinx-gallery/sphinx-gallery/issues/866>`__
-  Enable ``reset_modules`` to run either before or after examples, or both `870 <https://github.com/sphinx-gallery/sphinx-gallery/pull/870>`__ (`MatthewFlamm <https://github.com/MatthewFlamm>`__)

**Fixed bugs:**

-  embed_code_links throwing <exception: list indices must be integers or slices, not str> `879 <https://github.com/sphinx-gallery/sphinx-gallery/issues/879>`__
-  ``0.10.0`` breaks ``sphinx_gallery.load_style`` `878 <https://github.com/sphinx-gallery/sphinx-gallery/issues/878>`__
-  Add imagesg directive in load style `880 <https://github.com/sphinx-gallery/sphinx-gallery/pull/880>`__ (`lucyleeow <https://github.com/lucyleeow>`__)
-  Use bools for ‘plot_gallery’ in sphinx_gallery_conf `863 <https://github.com/sphinx-gallery/sphinx-gallery/pull/863>`__ (`timhoffm <https://github.com/timhoffm>`__)

**Closed issues:**

-  Idea: make galleries out of the “testing” folder to use each unit test as an example. `875 <https://github.com/sphinx-gallery/sphinx-gallery/issues/875>`__
-  Output text in dark mode is not visible `869 <https://github.com/sphinx-gallery/sphinx-gallery/issues/869>`__
-  Using a .gif image works in ``.rst`` sphinx build but not inside example generated with sphinx-gallery `868 <https://github.com/sphinx-gallery/sphinx-gallery/issues/868>`__
-  How to avoid capture of tqdm progress bars `867 <https://github.com/sphinx-gallery/sphinx-gallery/issues/867>`__

**Merged pull requests:**

-  DOC Add reference to sphinx-codeautolink `874 <https://github.com/sphinx-gallery/sphinx-gallery/pull/874>`__ (`felix-hilden <https://github.com/felix-hilden>`__)
-  Add Neuraxle to “Who uses Sphinx-Gallery” `873 <https://github.com/sphinx-gallery/sphinx-gallery/pull/873>`__ (`guillaume-chevalier <https://github.com/guillaume-chevalier>`__)
-  DOC Fix typo in dummy images doc `871 <https://github.com/sphinx-gallery/sphinx-gallery/pull/871>`__ (`lucyleeow <https://github.com/lucyleeow>`__)
-  CI: Fix CircleCI `865 <https://github.com/sphinx-gallery/sphinx-gallery/pull/865>`__ (`larsoner <https://github.com/larsoner>`__)

0.10.0

-------

In this version, the default Sphinx-Gallery `.css` files have been
updated so their names are all prepended with 'sg\_'.
For more details see `845 <https://github.com/sphinx-gallery/sphinx-gallery/pull/845#issuecomment-913130302>`_.

**Implemented enhancements:**

-  Generalising image_scrapers facility for non-images `833 <https://github.com/sphinx-gallery/sphinx-gallery/issues/833>`__
-  Add a mode that fails only for rst warnings and does not run examples `751 <https://github.com/sphinx-gallery/sphinx-gallery/issues/751>`__
-  Add a “template”, to make it easy to get started `555 <https://github.com/sphinx-gallery/sphinx-gallery/issues/555>`__
-  ENH Add config that generates dummy images to prevent missing image warnings `828 <https://github.com/sphinx-gallery/sphinx-gallery/pull/828>`__ (`lucyleeow <https://github.com/lucyleeow>`__)
-  ENH: add hidpi option to matplotlib_scraper and directive `808 <https://github.com/sphinx-gallery/sphinx-gallery/pull/808>`__ (`jklymak <https://github.com/jklymak>`__)

**Fixed bugs:**

-  BUG URL quote branch names and filepaths in Binder URLs `844 <https://github.com/sphinx-gallery/sphinx-gallery/pull/844>`__ (`sdhiscocks <https://github.com/sdhiscocks>`__)
-  Sanitize ANSI characters from generated RST: Remove `ANSI characters <https://en.wikipedia.org/wiki/ANSI_escape_code>`_ from HTML output `#838 <https://github.com/sphinx-gallery/sphinx-gallery/pull/838>`__ (`agramfort <https://github.com/agramfort>`__)
-  Bug Pin markupsafe version in Python nightly `831 <https://github.com/sphinx-gallery/sphinx-gallery/pull/831>`__ (`lucyleeow <https://github.com/lucyleeow>`__)
-  BUG Fix test_minigallery_directive failing on Windows `830 <https://github.com/sphinx-gallery/sphinx-gallery/pull/830>`__ (`lucyleeow <https://github.com/lucyleeow>`__)
-  BUG Fix LaTeX Error: File \`tgtermes.sty’ not found in CI `829 <https://github.com/sphinx-gallery/sphinx-gallery/pull/829>`__ (`lucyleeow <https://github.com/lucyleeow>`__)

**Closed issues:**

-  Galleries using bokeh `841 <https://github.com/sphinx-gallery/sphinx-gallery/issues/841>`__
-  TorchIO now uses sphinx-gallery `823 <https://github.com/sphinx-gallery/sphinx-gallery/issues/823>`__
-  New release `817 <https://github.com/sphinx-gallery/sphinx-gallery/issues/817>`__
-  Change DPI? `804 <https://github.com/sphinx-gallery/sphinx-gallery/issues/804>`__
-  Multiple images in horizontal list are not clickable (cannot zoom in) `429 <https://github.com/sphinx-gallery/sphinx-gallery/issues/429>`__
-  Notebook style issues with indentation `342 <https://github.com/sphinx-gallery/sphinx-gallery/issues/342>`__

**Merged pull requests:**

-  DOC Update reset_modules documentation `861 <https://github.com/sphinx-gallery/sphinx-gallery/pull/861>`__ (`lucyleeow <https://github.com/lucyleeow>`__)
-  Remove trailing whitespace `859 <https://github.com/sphinx-gallery/sphinx-gallery/pull/859>`__ (`lucyleeow <https://github.com/lucyleeow>`__)
-  Add info on enabling animation support to example `858 <https://github.com/sphinx-gallery/sphinx-gallery/pull/858>`__ (`dstansby <https://github.com/dstansby>`__)
-  Update css file names, fix documentation `857 <https://github.com/sphinx-gallery/sphinx-gallery/pull/857>`__ (`lucyleeow <https://github.com/lucyleeow>`__)
-  MAINT: Fix mayavi build hang circleci `850 <https://github.com/sphinx-gallery/sphinx-gallery/pull/850>`__ (`lucyleeow <https://github.com/lucyleeow>`__)
-  MAINT: Fix mayavi build hang azure CI `848 <https://github.com/sphinx-gallery/sphinx-gallery/pull/848>`__ (`lucyleeow <https://github.com/lucyleeow>`__)
-  Refactor execute_code_block in gen_rst.py `842 <https://github.com/sphinx-gallery/sphinx-gallery/pull/842>`__ (`lucyleeow <https://github.com/lucyleeow>`__)
-  [Maint] Remove travis `840 <https://github.com/sphinx-gallery/sphinx-gallery/pull/840>`__ (`agramfort <https://github.com/agramfort>`__)
-  DOC Add gif to supported image extensions `836 <https://github.com/sphinx-gallery/sphinx-gallery/pull/836>`__ (`lucyleeow <https://github.com/lucyleeow>`__)
-  DOC Clarifications and fixes to image_scrapers doc `834 <https://github.com/sphinx-gallery/sphinx-gallery/pull/834>`__ (`jnothman <https://github.com/jnothman>`__)
-  DOC Update projects list in readme.rst `826 <https://github.com/sphinx-gallery/sphinx-gallery/pull/826>`__ (`lucyleeow <https://github.com/lucyleeow>`__)
-  DOC Fix zenodo badge link `825 <https://github.com/sphinx-gallery/sphinx-gallery/pull/825>`__ (`lucyleeow <https://github.com/lucyleeow>`__)
-  DOC Add TorchIO to users list `824 <https://github.com/sphinx-gallery/sphinx-gallery/pull/824>`__ (`fepegar <https://github.com/fepegar>`__)

Links

• PyPI: https://pypi.org/project/sphinx-gallery
• Changelog: https://pyup.io/changelogs/sphinx-gallery/
• Repo: https://sphinx-gallery.github.io
• Docs: https://pythonhosted.org/sphinx-gallery/

[pyup-bot]

Closing this in favor of #435