Bump pkp and scielo_mx variant to v2 to refresh benchmark predictions

[HazalCiplak]

related to https://github.com/eLifePathways/ScienceBeam2.0/issues/117

[github-actions]

ScienceBeam Parser Evaluation

Overall (280 docs across 6 corpora)

grobid 0.9.0-crf (default): 280 docs | sciencebeam-parser:pr-684-97e8eea3-20260707.1526 (grobid_crf): 280 docs

Field (method)	Type	grobid 0.9.0-crf (default)	sciencebeam-parser:pr-684-97e8eea3-20260707.1526 (grobid_crf)	Δ grobid 0.9.0-crf (default)
title (exact)	string	0.532	0.528	-0.004
title (levenshtein)	string	0.665	0.669	+0.004
title (edit_sim)	string	0.677	0.677	+0.001
abstract (levenshtein)	string	0.639	0.636	-0.004
abstract (edit_sim)	string	0.664	0.665	+0.000
author_full_names (levenshtein)	partial_ulist	0.731	0.724	-0.007
author_full_names (edit_sim)	partial_ulist	0.742	0.740	-0.002
affiliation_text (levenshtein)	partial_ulist	0.495	0.483	-0.012
affiliation_text (edit_sim)	partial_ulist	0.600	0.580	-0.020
keywords (levenshtein)	partial_ulist	0.641	0.000	-0.641
keywords (edit_sim)	partial_ulist	0.603	0.000	-0.603
body_section_titles (levenshtein)	partial_list	0.338	0.338	-0.000
body_section_titles (edit_sim)	partial_list	0.328	0.332	+0.004
acknowledgement (levenshtein)	string	0.584	0.504	-0.080
acknowledgement (edit_sim)	string	0.595	0.516	-0.080
first_reference_text (levenshtein)	string	0.533	0.541	+0.008
first_reference_text (edit_sim)	string	0.663	0.670	+0.006
reference_title (levenshtein)	partial_list	0.446	0.429	-0.017
reference_title (edit_sim)	partial_list	0.454	0.448	-0.007
reference_doi (levenshtein)	partial_ulist	0.720	0.602	-0.117
reference_doi (edit_sim)	partial_ulist	0.665	0.568	-0.097

biorxiv (47 docs)

grobid 0.9.0-crf (default): 47 docs | sciencebeam-parser:pr-684-97e8eea3-20260707.1526 (grobid_crf): 47 docs

Field (method)	Type	grobid 0.9.0-crf (default)	sciencebeam-parser:pr-684-97e8eea3-20260707.1526 (grobid_crf)	Δ grobid 0.9.0-crf (default)
title (exact)	string	0.867	0.840	-0.028
title (levenshtein)	string	0.956	0.956	+0.000
title (edit_sim)	string	0.942	0.942	+0.000
abstract (levenshtein)	string	0.779	0.779	+0.000
abstract (edit_sim)	string	0.773	0.780	+0.007
author_full_names (levenshtein)	partial_ulist	0.977	0.975	-0.002
author_full_names (edit_sim)	partial_ulist	0.946	0.951	+0.005
affiliation_text (levenshtein)	partial_ulist	0.877	0.816	-0.060
affiliation_text (edit_sim)	partial_ulist	0.877	0.821	-0.056
keywords (levenshtein)	partial_ulist	0.835	0.000	-0.835
keywords (edit_sim)	partial_ulist	0.834	0.000	-0.834
body_section_titles (levenshtein)	partial_list	0.456	0.376	-0.080
body_section_titles (edit_sim)	partial_list	0.432	0.373	-0.060
acknowledgement (levenshtein)	string	0.732	0.548	-0.184
acknowledgement (edit_sim)	string	0.731	0.586	-0.146
first_reference_text (levenshtein)	string	0.905	0.905	+0.000
first_reference_text (edit_sim)	string	0.869	0.869	+0.000
reference_title (levenshtein)	partial_list	0.694	0.730	+0.035
reference_title (edit_sim)	partial_list	0.653	0.690	+0.036
reference_doi (levenshtein)	partial_ulist	0.865	0.858	-0.007
reference_doi (edit_sim)	partial_ulist	0.824	0.821	-0.003

ore (49 docs)

grobid 0.9.0-crf (default): 49 docs | sciencebeam-parser:pr-684-97e8eea3-20260707.1526 (grobid_crf): 49 docs

Field (method)	Type	grobid 0.9.0-crf (default)	sciencebeam-parser:pr-684-97e8eea3-20260707.1526 (grobid_crf)	Δ grobid 0.9.0-crf (default)
title (exact)	string	0.537	0.515	-0.022
title (levenshtein)	string	0.600	0.639	+0.039
title (edit_sim)	string	0.717	0.742	+0.025
abstract (levenshtein)	string	0.693	0.693	+0.000
abstract (edit_sim)	string	0.738	0.740	+0.002
author_full_names (levenshtein)	partial_ulist	0.802	0.798	-0.004
author_full_names (edit_sim)	partial_ulist	0.792	0.794	+0.002
affiliation_text (levenshtein)	partial_ulist	0.564	0.507	-0.057
affiliation_text (edit_sim)	partial_ulist	0.577	0.514	-0.063
keywords (levenshtein)	partial_ulist	0.297	0.000	-0.297
keywords (edit_sim)	partial_ulist	0.292	0.000	-0.292
body_section_titles (levenshtein)	partial_list	0.198	0.228	+0.030
body_section_titles (edit_sim)	partial_list	0.232	0.271	+0.038
acknowledgement (levenshtein)	string	0.921	0.885	-0.035
acknowledgement (edit_sim)	string	0.935	0.881	-0.054
first_reference_text (levenshtein)	string	0.444	0.469	+0.024
first_reference_text (edit_sim)	string	0.620	0.606	-0.014
reference_title (levenshtein)	partial_list	0.229	0.283	+0.054
reference_title (edit_sim)	partial_list	0.262	0.312	+0.049
reference_doi (levenshtein)	partial_ulist	0.641	0.033	-0.609
reference_doi (edit_sim)	partial_ulist	0.494	0.010	-0.485

pkp (50 docs)

grobid 0.9.0-crf (default): 50 docs | sciencebeam-parser:pr-684-97e8eea3-20260707.1526 (grobid_crf): 50 docs

Field (method)	Type	grobid 0.9.0-crf (default)	sciencebeam-parser:pr-684-97e8eea3-20260707.1526 (grobid_crf)	Δ grobid 0.9.0-crf (default)
title (exact)	string	0.676	0.676	+0.000
title (levenshtein)	string	0.810	0.795	-0.015
title (edit_sim)	string	0.781	0.759	-0.022
abstract (levenshtein)	string	0.746	0.746	+0.000
abstract (edit_sim)	string	0.735	0.737	+0.002
author_full_names (levenshtein)	partial_ulist	0.785	0.777	-0.008
author_full_names (edit_sim)	partial_ulist	0.780	0.769	-0.011
affiliation_text (levenshtein)	partial_ulist	0.618	0.617	-0.002
affiliation_text (edit_sim)	partial_ulist	0.680	0.651	-0.029
keywords (levenshtein)	partial_ulist	0.887	0.000	-0.887
keywords (edit_sim)	partial_ulist	0.876	0.000	-0.876
body_section_titles (levenshtein)	partial_list	0.617	0.647	+0.030
body_section_titles (edit_sim)	partial_list	0.560	0.587	+0.027
acknowledgement (levenshtein)	string	0.727	0.667	-0.061
acknowledgement (edit_sim)	string	0.739	0.656	-0.083
first_reference_text (levenshtein)	string	0.907	0.920	+0.013
first_reference_text (edit_sim)	string	0.876	0.896	+0.020
reference_title (levenshtein)	partial_list	0.706	0.619	-0.087
reference_title (edit_sim)	partial_list	0.697	0.620	-0.077
reference_doi (levenshtein)	partial_ulist	0.984	0.984	+0.000
reference_doi (edit_sim)	partial_ulist	0.984	0.952	-0.032

scielo_br (50 docs)

grobid 0.9.0-crf (default): 50 docs | sciencebeam-parser:pr-684-97e8eea3-20260707.1526 (grobid_crf): 50 docs

Field (method)	Type	grobid 0.9.0-crf (default)	sciencebeam-parser:pr-684-97e8eea3-20260707.1526 (grobid_crf)	Δ grobid 0.9.0-crf (default)
title (exact)	string	0.462	0.485	+0.023
title (levenshtein)	string	0.485	0.485	+0.000
title (edit_sim)	string	0.512	0.512	+0.000
abstract (levenshtein)	string	0.697	0.677	-0.020
abstract (edit_sim)	string	0.666	0.652	-0.013
author_full_names (levenshtein)	partial_ulist	0.607	0.592	-0.015
author_full_names (edit_sim)	partial_ulist	0.658	0.653	-0.005
affiliation_text (levenshtein)	partial_ulist	0.000	0.000	+0.000
affiliation_text (edit_sim)	partial_ulist	0.298	0.295	-0.003
keywords (levenshtein)	partial_ulist	0.538	0.000	-0.538
keywords (edit_sim)	partial_ulist	0.515	0.000	-0.515
body_section_titles (levenshtein)	partial_list	0.265	0.291	+0.026
body_section_titles (edit_sim)	partial_list	0.275	0.295	+0.020
acknowledgement (levenshtein)	string	0.667	0.571	-0.095
acknowledgement (edit_sim)	string	0.704	0.618	-0.086
first_reference_text (levenshtein)	string	0.083	0.043	-0.041
first_reference_text (edit_sim)	string	0.399	0.394	-0.004
reference_title (levenshtein)	partial_list	0.388	0.318	-0.070
reference_title (edit_sim)	partial_list	0.407	0.365	-0.042
reference_doi (levenshtein)	partial_ulist	0.934	0.897	-0.038
reference_doi (edit_sim)	partial_ulist	0.890	0.842	-0.048

scielo_mx (34 docs)

grobid 0.9.0-crf (default): 34 docs | sciencebeam-parser:pr-684-97e8eea3-20260707.1526 (grobid_crf): 34 docs

Field (method)	Type	grobid 0.9.0-crf (default)	sciencebeam-parser:pr-684-97e8eea3-20260707.1526 (grobid_crf)	Δ grobid 0.9.0-crf (default)
title (exact)	string	0.057	0.057	+0.000
title (levenshtein)	string	0.489	0.489	+0.000
title (edit_sim)	string	0.497	0.497	+0.000
abstract (levenshtein)	string	0.111	0.111	+0.000
abstract (edit_sim)	string	0.402	0.404	+0.001
author_full_names (levenshtein)	partial_ulist	0.720	0.720	+0.000
author_full_names (edit_sim)	partial_ulist	0.730	0.730	+0.000
affiliation_text (levenshtein)	partial_ulist	0.209	0.207	-0.002
affiliation_text (edit_sim)	partial_ulist	0.461	0.462	+0.001
keywords (levenshtein)	partial_ulist	0.627	0.000	-0.627
keywords (edit_sim)	partial_ulist	0.579	0.000	-0.579
body_section_titles (levenshtein)	partial_list	0.000	0.000	+0.000
body_section_titles (edit_sim)	partial_list	0.000	0.000	+0.000
acknowledgement (levenshtein)	string	0.000	0.000	+0.000
acknowledgement (edit_sim)	string	0.000	0.000	+0.000
first_reference_text (levenshtein)	string	0.474	0.474	+0.000
first_reference_text (edit_sim)	string	0.560	0.561	+0.001
reference_title (levenshtein)	partial_list	0.327	0.326	-0.001
reference_title (edit_sim)	partial_list	0.348	0.351	+0.003
reference_doi (levenshtein)	partial_ulist	0.000	0.000	+0.000
reference_doi (edit_sim)	partial_ulist	0.000	0.000	+0.000

scielo_preprints-jats (50 docs)

grobid 0.9.0-crf (default): 50 docs | sciencebeam-parser:pr-684-97e8eea3-20260707.1526 (grobid_crf): 50 docs

Field (method)	Type	grobid 0.9.0-crf (default)	sciencebeam-parser:pr-684-97e8eea3-20260707.1526 (grobid_crf)	Δ grobid 0.9.0-crf (default)
title (exact)	string	0.462	0.462	+0.000
title (levenshtein)	string	0.611	0.611	+0.000
title (edit_sim)	string	0.571	0.572	+0.001
abstract (levenshtein)	string	0.649	0.649	+0.000
abstract (edit_sim)	string	0.595	0.600	+0.004
author_full_names (levenshtein)	partial_ulist	0.509	0.499	-0.010
author_full_names (edit_sim)	partial_ulist	0.557	0.553	-0.004
affiliation_text (levenshtein)	partial_ulist	0.636	0.686	+0.051
affiliation_text (edit_sim)	partial_ulist	0.677	0.712	+0.035
keywords (levenshtein)	partial_ulist	0.662	0.000	-0.662
keywords (edit_sim)	partial_ulist	0.522	0.000	-0.522
body_section_titles (levenshtein)	partial_list	0.388	0.375	-0.013
body_section_titles (edit_sim)	partial_list	0.367	0.361	-0.006
acknowledgement (levenshtein)	string	0.286	0.200	-0.086
acknowledgement (edit_sim)	string	0.286	0.200	-0.086
first_reference_text (levenshtein)	string	0.387	0.438	+0.050
first_reference_text (edit_sim)	string	0.635	0.667	+0.031
reference_title (levenshtein)	partial_list	0.304	0.283	-0.020
reference_title (edit_sim)	partial_list	0.333	0.331	-0.002
reference_doi (levenshtein)	partial_ulist	0.671	0.654	-0.017
reference_doi (edit_sim)	partial_ulist	0.592	0.606	+0.015