WIP: Build a docker image

.github/workflows/dockerbuild.yml

@@ -1,25 +1,11 @@
 name: Build and Push Docker Image
 
-on:
-  push:
-    branches:
-      - 'master'
-  pull_request:
-    branches:
-      - main
+on: [push, pull_request]
 
 jobs:
   build:
-    runs-on: ubuntu-18.04
+    runs-on: ubuntu-latest
     steps:
-    - name: Maximize build space
-      uses: easimon/maximize-build-space@master
-      with:
-        root-reserve-mb: 32768
-        remove-dotnet: 'true'
-        remove-android: 'true'
-        remove-haskell: 'true'
-
     - name: Checkout repo
       uses: actions/checkout@v2
 
@@ -29,14 +15,8 @@ jobs:
     - name: Set up Docker Buildx
       uses: docker/setup-buildx-action@v1
 
-    - name: Login to GHCR
-      uses: docker/login-action@v1
-      with:
-        registry: ghcr.io
-        username: dipy
-        password: ${{secrets.CR_PAT}}
-
-    - name: Build and push docker image
-      run: sh ./Docker/dockerbuild.sh \
+    - name: Build docker image
+      run: sh ./docker/dockerbuild.sh \
         "${{github.sha}}" \
         "dipy"
+

docker/Dockerfile

@@ -1,40 +1,25 @@
-FROM nvcr.io/nvidia/cuda:11.0-devel
+ARG NVIDIAVERSION=12.0.1-devel-ubuntu20.04
+FROM nvidia/cuda:${NVIDIAVERSION}
 
 SHELL ["/bin/bash", "-c"]
 
 ENV DEBIAN_FRONTEND=noninteractive
 
-# upgrade
-RUN apt update && \
-    apt install --assume-yes apt-transport-https \
-    	ca-certificates gnupg \
-	software-properties-common gcc git wget numactl
-RUN wget -O - https://apt.kitware.com/keys/kitware-archive-latest.asc 2>/dev/null \
-    	      | gpg --dearmor - | tee /etc/apt/trusted.gpg.d/kitware.gpg >/dev/null
-RUN apt-add-repository "deb https://apt.kitware.com/ubuntu/ focal main"
-RUN apt install -y cmake libncurses5-dev libtinfo6
-
-# Anaconda
-RUN cd /opt && wget -P /tmp https://repo.anaconda.com/archive/Anaconda3-2020.02-Linux-x86_64.sh \
-    && bash /tmp/Anaconda3-2020.02-Linux-x86_64.sh -b -p /opt/anaconda \
-    && rm -rf /tmp/Anaconda3-2020.02-Linux-x86_64.sh \
-    && eval "$(/opt/anaconda/bin/conda shell.bash hook)"
+RUN apt-get update && apt-get install --assume-yes apt-transport-https \
+	ca-certificates gnupg software-properties-common gcc git wget numactl cmake
+
+RUN wget -P /tmp https://repo.anaconda.com/archive/Anaconda3-2022.10-Linux-x86_64.sh
+RUN bash /tmp/Anaconda3-2022.10-Linux-x86_64.sh -b -p /opt/anaconda
+RUN rm -rf /tmp/Anaconda3-2022.10-Linux-x86_64.sh
+RUN cd /opt && eval "$(/opt/anaconda/bin/conda shell.bash hook)"
 ENV PATH /opt/anaconda/bin:${PATH}
 ENV LD_LIBRARY_PATH /opt/anaconda/lib:${LD_LIBRARY_PATH}
 
 # python prereqs
 RUN pip install numpy scipy cython nibabel dipy tqdm
 
-# copy stuff
-COPY CMakeLists.txt /opt/GPUStreamlines/CMakeLists.txt
-COPY run_dipy_gpu.py /opt/GPUStreamlines/run_dipy_gpu.py
-COPY run_dipy_cpu.py /opt/GPUStreamlines/run_dipy_cpu.py
-COPY run_dipy_gpu_hardi.py /opt/GPUStreamlines/run_dipy_gpu_hardi.py
-COPY run_dipy_cpu_hardi.py /opt/GPUStreamlines/run_dipy_cpu_hardi.py
-COPY merge_trk.sh /opt/exec/merge_trk.sh
-COPY cuslines /opt/GPUStreamlines/cuslines
-COPY external /opt/GPUStreamlines/external
-RUN mkdir -p /opt/exec/output
+RUN git clone --recurse-submodules https://github.com/dipy/GPUStreamlines.git
+RUN cd GPUStreamlines && pip install .
 
 # compile
 RUN cd /opt/GPUStreamlines && mkdir build && cd build \

docker/dockerbuild.sh

@@ -1,7 +1,7 @@
 COMMIT=${1}
 COMMIT="$(echo "${COMMIT}" | tr -d '[:space:]')"
 export COMMIT
-NO_TAG="ghcr.io/${2}/GPUStreamlines"
+NO_TAG="ghcr.io/${2}/gpustreamlines"
 TAG="${NO_TAG}:${COMMIT}"
 TAG2="${NO_TAG}:latest"
 TAG="$(echo "${TAG}" | tr -d '[:space:]')"
@@ -10,4 +10,3 @@ NO_TAG="$(echo "${NO_TAG}" | tr -d '[:space:]')"
 
 echo $TAG
 docker build --no-cache -t $TAG -t $TAG2 --build-arg COMMIT ./docker
-docker push --all-tags $NO_TAG