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Releases: denoptim-project/AutoCompChem

v3.4.0

03 Mar 10:44

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  • Generate constraints by interpolation
  • Expression language syntax (e.g., ${values*param/functions(values)}) available for any numerical input
  • Documented fetching of data produced by previous job in the workflow
  • 0-based job indexing
  • More informative error messages
  • Moved minor warnings to devel-level printing

Full Changelog: v3.3.0...v3.4.0

v3.3.0

11 Feb 11:16

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New capabilities:

  • define connectivity for molecular mechanic jobs (XTB).
  • generate atom-specific strings based on SMARTS rules.
  • run jobs in a loop with iteration-dependent alteration of job details.
  • modify geometry by stretching bonds.
  • print data made available (i.e., exposed) by jobs.
  • expression language with decimal formatting of the result.

Enhancements:

  • geometry descriptors are now based on atom tuples.
  • create work directory upon job execution, not initialization.
  • inFile molecular input takes priority over input inherited from previous jobs
  • specify type of constrain irrespective on interatomic connectivity
  • specify format of input irrespective on extension
  • refined documentation.

Full Changelog: v3.2.0...v3.3.0

v3.2.0

15 Sep 06:54

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  • Run assisted jobs: autonomous reaction to know situations resulting from jobs (task assistJob)
  • Includes default situation for xTB geometry optimization jobs
  • Search of conformer in presence of dummy atoms
  • Definition of conformational degree of freedon by two- or four-atom queries.
  • Run any job in a customized work directory different that JVM's user.dir
  • Cross-platform REGEX-based file search
  • General cleanup

v3.1.0

26 Jun 11:06

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  • Add properties like energy and kind of critical point to the final geometry extracted from a comp chem job.
  • Find xTB final geometries even in opt jobs that perform no optimization steps
  • Improve measurement of geometrical descriptors
  • fix extraction of fragments without SMARTS selection rules

Full Changelog: v3.0.0...v3.1.0

v3.0.0

20 May 09:07

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What's Changed

  • Extended functionality on molecular manipulation (atom/bond editing and generation of conformers, constraints, and atom-specific tuples) and job manipulation (serial and parallel runners, evaluation and monitoring).
  • CLI with all task-related documentation accessible from "-h" option
  • Agnostic write-input-read-output (WIRO) capabilities
  • JSON-based definition of ACC jobs and computational chemistry jobs
  • Extensive refactoring or core functionality
  • Logging from log4j2
  • Upgrade to Java>17

Full Changelog: v2.2...v3.0.0

v2.0

11 Nov 15:51
54869ba

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  • Maven built project
  • Multitask-enabled