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1.,3-beta-glucan synthase reaction modifications #4

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369165e
fix-rxn: deleteing 1,3-beta-glucan synthase
demilappa Mar 21, 2018
16fd1c0
feat-rxn: added 1,3-beta-glucan synthase reaction back to the model
demilappa Mar 21, 2018
eb9a1dd
chore: updated txt, mat, yaml model file formats
demilappa Mar 21, 2018
0c9ab34
refactor: changed code for exporting to other file formats
demilappa Mar 21, 2018
a7afca2
chore: updated xls model file format, too
demilappa Mar 21, 2018
32a7ea0
refactor: changed code for exporting to other file formats
demilappa Mar 21, 2018
8425bff
docs: update README.md file
demilappa Mar 22, 2018
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4 changes: 3 additions & 1 deletion ComplementaryScripts/WorkshopScript.m
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Expand Up @@ -45,4 +45,6 @@
%% Exporting model to all formats (sbml, txt, yaml, mat)
writeCbModel(modelYeast, 'txt', 'yeastGEM.txt');
importModel('yeastGEM.xml',false,false,false);
exportModel(modelYeast,'newYeastGEM',true,false,false);
exportModel(ans,'yeastGEM',true,false,false);
save('yeastGEM.mat', 'modelYeast');
model2xls(modelYeast,'yeastGEM.xls');
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6,992 changes: 3,496 additions & 3,496 deletions ModelFiles/txt/yeastGEM.txt
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51,652 changes: 23,919 additions & 27,733 deletions ModelFiles/xml/yeastGEM.xml
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39,905 changes: 19,991 additions & 19,914 deletions ModelFiles/yaml/yeastGEM.yml
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5 changes: 2 additions & 3 deletions README.md
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Expand Up @@ -30,11 +30,11 @@ The repository contains:
* WorkshopScript.m, a matlab script that includes all the GEM manipulation commands for this workshop


Instructions for the workshop can be found [here](http://wiki.sysbio.chalmers.se/mediawiki/index.php/Computational_Lab)
Instructions for the workshop can be found [here](https://sysbiowiki.se/wiki/images/5/58/Workshop2018-03-23.pdf)

This repository is administered by _Dimitra Lappa, [demilappa](https://github.com/demilappa)_, Division of Systems and Synthetic Biology, Department of Biology and Biological Engineering, Chalmers University of Technology

Last update: 2018-03-20
Last update: 2018-03-22
## Installation

### Required Software:
Expand Down Expand Up @@ -63,4 +63,3 @@ Contributors for the Yeast Repository:
* [Hongzhong Lu](https://www.chalmers.se/en/Staff/Pages/luho.aspx) ([@hongzhonglu](https://github.com/hongzhonglu)), Chalmers University of Technology, Gothenburg Sweden
* [Simonas Marcišauskas](https://www.chalmers.se/en/Staff/Pages/simmarc.aspx) ([@simas232](https://github.com/simas232)), Chalmers University of Technology, Gothenburg Sweden
* [Benjamín J. Sánchez](https://www.chalmers.se/en/staff/Pages/bensan.aspx) ([@BenjaSanchez](https://github.com/benjasanchez)), Chalmers University of Technology, Gothenburg Sweden