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UnboundLocalError: local variable 'out_bam_file' referenced before assignment

Status: Open.

#954 In deeptools/HiCExplorer;

· NJU-Bio-Info opened on Nov 26, 2025

Unequal number of contacts after hicNormalize --normalize smallest

Status: Open.

#953 In deeptools/HiCExplorer;

· Ma-Mes opened on Nov 20, 2025

hicConvertFormat shall use <code>"HDF5::MCOOL"</code> rather than <code>"HDF5::Cooler"</code> for <code>mcool</code> hdf attribute <code>format</code>

Status: Open.

#952 In deeptools/HiCExplorer;

· Fan-iX opened on Nov 14, 2025

Is the bias(weight) obtained for each bin by the kr method of hicCorrectMatrix a division bias(weight)?

Status: Open.

#951 In deeptools/HiCExplorer;

· oganesson76 opened on Sep 25, 2025

Range of balance correction

Status: Open.

#950 In deeptools/HiCExplorer;

· oganesson76 opened on Sep 11, 2025

Does it support no enzyme cleavage site ?

Status: Open.

#949 In deeptools/HiCExplorer;

· normal-154 opened on Sep 8, 2025

Persistent low-coverage “blue stripes” in Hi-C contact maps (dm6)

Status: Open.

#948 In deeptools/HiCExplorer;

· Cathmyt opened on Aug 13, 2025

Issues with using hicTransform

Status: Open.

#945 In deeptools/HiCExplorer;

· HengkuanLi opened on Jul 14, 2025

Unexpected change in GInteractions row-count after hicNormalize / hicCorrectMatrix, and --load_raw_values flag not giving raw counts in normalized/corrected matrix

Status: Open.

#944 In deeptools/HiCExplorer;

· fatimanawmi opened on Jul 9, 2025

HicNormalize or hicCorrectMatrix

Status: Open.

#943 In deeptools/HiCExplorer;

· DakeshiKitano opened on Jun 28, 2025

Tips for running on a haplotype-resolved reference genome

Status: Open.

#942 In deeptools/HiCExplorer;

· marija-kra opened on Jun 25, 2025

hicPCA: The A/B compartments of the X chromosome is not properly recognized

Status: Open.

#941 In deeptools/HiCExplorer;

· lscnsdad opened on Jun 21, 2025