GitHub - davytorres/T-cell-analysis-tool

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 20 Commits
README		README
bayesian		bayesian
calculate_mean_squared_displacement.f		calculate_mean_squared_displacement.f
calculate_volume_traversed.f		calculate_volume_traversed.f
cellspeed_vs_time		cellspeed_vs_time
corrangle		corrangle
directionality_flu		directionality_flu
directionality_flu_orig		directionality_flu_orig
displacement		displacement
displacement_orig		displacement_orig
elapsed_time		elapsed_time
elapsed_time_orig		elapsed_time_orig
file2.txt		file2.txt
flu_angle		flu_angle
flu_avg_velocity		flu_avg_velocity
flu_avg_velocity_orig		flu_avg_velocity_orig
flu_cons		flu_cons
flu_cons_time		flu_cons_time
flu_persist		flu_persist
flu_slopes		flu_slopes
flu_time		flu_time
flu_total		flu_total
flu_unique		flu_unique
flu_velocity		flu_velocity
flu_volume		flu_volume
fort.530		fort.530
fort.532		fort.532
fort.780		fort.780
fort.881		fort.881
fort.882		fort.882
fort.901		fort.901
identify_tracks.f		identify_tracks.f
license.txt		license.txt
makefile		makefile
mean_half		mean_half
median.f		median.f
mxnf		mxnf
observedtcell.f		observedtcell.f
pearsonr.f		pearsonr.f
positions		positions
positions_new		positions_new
readcellsnew.f		readcellsnew.f
rms_slope		rms_slope
rms_slopet		rms_slopet
slopeall_rms		slopeall_rms
sort.f		sort.f
tcell		tcell
tcjnew.f		tcjnew.f
tcjnew_s.f		tcjnew_s.f
test_script		test_script
timestep		timestep

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This repository analyzes the motion of T cells.

You will need the gfortran compiler which ideally would be running in a Linux environment.

Download the codes

tcjnew.f

readcellsnew.f

makefile

mxnf

file2.txt

Compile the code by typing

make

Run the code by typing

./tcell