Skip to content

ENH: organize - show files with conflicts requiring adding _obj- #1490

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Draft
yarikoptic wants to merge 3 commits into
base: master
Choose a base branch
from
Draft

ENH: organize - show files with conflicts requiring adding _obj- #1490

Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
c45ffe2
ENH: organize - show files with conflicts requiring adding _obj-
yarikoptic Aug 20, 2024
c47269b
Small tune ups from code review
yarikoptic Aug 20, 2024
e456ebb
RF: make logging messages independent of active level - 1: hits alway…
yarikoptic Aug 21, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
21 changes: 19 additions & 2 deletions dandi/organize.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -307,9 +307,26 @@ def _assign_obj_id(metadata, non_unique):
# Avoid heavy import by importing within function:
from .pynwb_utils import get_object_id

msg = "%d out of %d paths are not unique" % (len(non_unique), len(metadata))
msg = f"{len(non_unique)} out of {len(metadata)} paths are not unique."
non_unique_paths = sorted(non_unique)

# provide more information to the user
def get_msg(path):
in_paths = non_unique[path]
return f"{len(in_paths)} paths 'compete' for the path {path!r}:" + "\n ".join(
[""] + in_paths
)

lgr.info(msg + ". We will try adding _obj- based on crc32 of object_id")
msg += "\n " + get_msg(non_unique_paths[0])
if len(non_unique) > 1:
msg += f"\n {len(non_unique) - 1} more case(s) are listed at DEBUG level."
lgr.info("%s", msg)
if len(non_unique) > 1:
msg = "Additional non-unique paths:"
for ex_path in non_unique_paths[1:]:
msg += "\n " + get_msg(ex_path)
lgr.debug("%s", msg)
lgr.info("We will try adding _obj- based on crc32 of object_id")
seen_obj_ids = {} # obj_id: object_id
seen_object_ids = {} # object_id: path
recent_nwb_msg = "NWB>=2.1.0 standard (supported by pynwb>=1.1.0)."
Expand Down