[Snyk] Security upgrade keras from 2.6.0 to 3.13.2

[sestinj]

Snyk has created this PR to fix 1 vulnerabilities in the pip dependencies of this project.

Snyk changed the following file(s):

• manual-testing-sandbox/requirements.txt

⚠️ Warning

typer 0.3.2 has requirement click<7.2.0,>=7.1.1, but you have click 8.1.8.
thinc 8.0.17 requires murmurhash, which is not installed.
thinc 8.0.17 requires cymem, which is not installed.
thinc 8.0.17 requires preshed, which is not installed.
spacy 3.1.2 requires murmurhash, which is not installed.
spacy 3.1.2 requires cymem, which is not installed.
spacy 3.1.2 requires preshed, which is not installed.
qtconsole 5.4.4 requires pyzmq, which is not installed.
notebook 6.5.7 requires pyzmq, which is not installed.
jupyter-server 1.24.0 requires pyzmq, which is not installed.
jupyter-console 6.6.3 requires pyzmq, which is not installed.
jupyter-client 7.4.9 requires pyzmq, which is not installed.
ipykernel 6.16.2 requires pyzmq, which is not installed.
exceptiongroup 1.3.1 has requirement typing-extensions>=4.6.0; python_version < "3.13", but you have typing-extensions 3.10.0.2.

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• This PR was automatically created by Snyk using the credentials of a real user.
• Some vulnerabilities couldn't be fully fixed and so Snyk will still find them when the project is tested again. This may be because the vulnerability existed within more than one direct dependency, but not all of the affected dependencies could be upgraded.

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Summary by cubic

Upgraded Keras from 2.6.0 to 3.13.2 in manual-testing-sandbox/requirements.txt to fix vulnerability SNYK-PYTHON-KERAS-15268069 and move the sandbox to Keras 3.

• Migration
  • Run sandbox scripts/notebooks on Keras 3 and update any tensorflow.keras imports to keras if used.
  • Set a backend explicitly (e.g., export KERAS_BACKEND=tensorflow or torch) to avoid runtime mismatches.
  • If using the PyTorch backend, keep torch installed (already in requirements) and run a quick training smoke test.

^{Written for commit 7d25883. Summary will update on new commits.}

[cubic-dev-ai]

1 issue found across 1 file

Prompt for AI agents (all issues)

Check if these issues are valid — if so, understand the root cause of each and fix them. If appropriate, use sub-agents to investigate and fix each issue separately.


<file name="manual-testing-sandbox/requirements.txt">

<violation number="1" location="manual-testing-sandbox/requirements.txt:29">
P2: Keras 3.13.2 requires a newer TensorFlow (>=2.16.1). With tensorflow==2.6.0 still pinned, this upgrade introduces an incompatible dependency set. Align TensorFlow or Keras versions to a compatible pair.</violation>
</file>

_{Reply with feedback, questions, or to request a fix. Tag @cubic-dev-ai to re-run a review.}

[cubic-dev-ai]

P2: Keras 3.13.2 requires a newer TensorFlow (>=2.16.1). With tensorflow==2.6.0 still pinned, this upgrade introduces an incompatible dependency set. Align TensorFlow or Keras versions to a compatible pair.

Prompt for AI agents

Check if this issue is valid — if so, understand the root cause and fix it. At manual-testing-sandbox/requirements.txt, line 29:

<comment>Keras 3.13.2 requires a newer TensorFlow (>=2.16.1). With tensorflow==2.6.0 still pinned, this upgrade introduces an incompatible dependency set. Align TensorFlow or Keras versions to a compatible pair.</comment>

<file context>
@@ -26,7 +26,7 @@ spacy==3.1.2
 # Deep Learning
 torch==2.6.0
-keras==2.6.0
+keras==3.13.2
 
 # Image processing
</file context>