Export/Import commands#3

Merged

Claptar merged 62 commits intomainfrom

Jan 27, 2026

Commits on Jan 15, 2026

Commits on Jan 23, 2026

Rename 'object' option to 'entry' in info command and add depth option for recursion control
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Refactor show_info function to replace obj_path with entry_path and add depth parameter for recursion control
Claptar
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Refactor get_entry_type function to replace 'obj' with 'entry' and improve encoding handling; update axis_len function to raise exceptions for error cases
Claptar
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Refactor info command tests to replace 'object' with 'entry' flag and update related assertions
Claptar
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Enhance axis_len tests to validate error handling for non-existent axes, non-group types, and missing index datasets
Claptar
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Added element specs for .h5ad files
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Refactor info and export_dataframe commands to use arguments instead of options for entry paths; add error handling for show_info function.
Claptar
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Enhance get_entry_type function to support legacy categorical and dataframe formats; improve version detection and details for various entry types.
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Refactor read_categorical_column and col_chunk_as_strings to support both modern and legacy formats; enhance error handling and caching for categorical data retrieval.
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Add support for legacy v0.1.0 h5ad files; implement tests for legacy categorical and dataframe formats
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Update show_info and _show_types_tree functions to exclude '__categories' from key processing; enhance child key filtering.
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Enhance export_table function to support both modern and legacy dataframe formats; exclude reserved keys from column list and improve status reporting during export.
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Enhance console initialization in CLI to ensure Rich output is visible in non-TTY environments.
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Add tests for export_dataframe command with various options and flags
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Update import statements in __init__.py to include additional export functions
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Add Zarr element specifications documentation
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Enhance export functionality to support awkward-array type and improve export_npy and export_mtx methods for better handling of datasets and chunk processing.
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Refactor CLI export commands to improve parameter naming and enhance functionality for exporting various data types
Claptar
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Add tests for exporting legacy v0.1.0 dataframe and improve output validation in import tests
Claptar
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Commits on Jan 26, 2026

Commits on Jan 27, 2026