Skip to content

Comments

added alternative name for SNP column#267

Open
LisaSikkema wants to merge 1 commit intobulik:masterfrom
LisaSikkema:patch-1
Open

added alternative name for SNP column#267
LisaSikkema wants to merge 1 commit intobulik:masterfrom
LisaSikkema:patch-1

Conversation

@LisaSikkema
Copy link

I'm working with GWAS summary statistics where the SNP column is called "variant_id", so added that to the dictionary.

I'm working with GWAS summary statistics where the SNP column is called "variant_id", so added that to the dictionary.
@LisaSikkema
Copy link
Author

hmm this is actually not ideal, because I just encountered another sum stats file that has both variant_id and rs_id as columns, and in this case variant_id is not the one we want. Not sure if you guys want to account for all of this in the script.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant