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README.md

@@ -104,8 +104,8 @@ subdir: osx-64
 <!-- ### rpScore process -->
 **From Python code**
 ```python
-from rptools.rpscore import predict_score
-from rptools.rplibs import rpPathway
+from rpscore import predict_score
+from rplibs import rpPathway
 
 pathway = rpPathway(
     infile='tests/rpscore/data/pathway.xml'
@@ -115,7 +115,7 @@ global_score = predict_score(pathway)
 ```
 **From CLI**
 ```sh
-python -m rptools.rpscore <input_rpsbml> <output_rpsbml>
+python -m rpscore <input_rpsbml> <output_rpsbml>
 ```
 
 ## Tests

environment-dev.yaml

@@ -1,4 +1,4 @@
-name: rpfba
+name: rpscore
 channels:
   - conda-forge
   - nodefaults

rpscore/__main__.py

@@ -1,7 +1,9 @@
 from os import path as os_path, makedirs as os_makedirs
 from .rpscore import predict_score, ThermoError, FBAError
 from .Args import add_arguments
+from ._version import __version__
 from brs_utils import (
+    init as init_logger,
     build_args_parser,
 )
 from rplibs import rpPathway
@@ -16,9 +18,7 @@ def entry_point():
     )
     args = parser.parse_args()
 
-    from rptools.__main__ import init
-
-    logger = init(parser, args)
+    logger = init_logger(parser, args, __version__)
 
     pathway = rpPathway(infile=args.infile, logger=logger)