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feat(core): add skiplist to CheckPoint for faster traversal#2048

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feat(core): add skiplist to CheckPoint for faster traversal#2048
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evanlinjin:feature/skiplist

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@evanlinjin evanlinjin commented Sep 25, 2025

Description

Adds a skip pointer and index field to CheckPoint to accelerate traversal on dense chains. A single skip pointer is set every 1000 checkpoints (by index), giving a several-hundred-× constant-factor speedup for get(), floor_at(), and range() on chains near the current Bitcoin tip height.

This is a constant-factor speedup, not O(√n) — a fixed interval k gives O(n/k + k), still asymptotically linear. For BDK's realistic size regime, though, the constant factor is ample: on a ~1M-checkpoint dense chain, positional lookups drop from ~1M hops to roughly 1–2k (tens of microseconds), well under any sensible latency budget.

Why it's useful

@martinsaposnic reported in this comment that Wallet::transactions() exceeded a 2-second poll budget on LDK-on-mutinynet with bitcoind as chain source, due to O(n) checkpoint traversal over a dense chain. The skiplist pulls this scenario far under budget.

Notes to the reviewers

  • Skip pointers are placed every 1000 checkpoints by index (not height), so the distribution stays consistent regardless of whether the chain is dense or sparse.
  • k = 1000 was chosen because the fixed-interval skiplist is minimized at k ≈ √n, and the motivating workload sits around n ≈ 1M (√n ≈ 1000). Smaller values bias the win toward chains of n ≈ 10k, where linear is already fast enough.
  • insert() rebuilds the affected portion of the chain via the existing extend/push paths, so index/skip invariants are maintained automatically.
  • All existing APIs remain unchanged.
  • A multi-level skiplist would give O(log n) but adds meaningful complexity; for BDK's realistic workload, the constant-factor win is sufficient and not worth the extra machinery.

Changelog notice

Added

  • skip pointer and index fields on CheckPoint.
  • Constant-factor traversal speedup for get(), floor_at(), and range() on dense chains.
  • Benchmarks covering small, medium, and large chains.

Checklists

All Submissions:

New Features:

  • I've added tests for the new feature
  • I've added docs for the new feature

🤖 Generated with Claude Code

@evanlinjin evanlinjin marked this pull request as draft September 25, 2025 08:08
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Guys, this is purely done by Claude. I haven't reviewed it yet.

@evanlinjin evanlinjin force-pushed the feature/skiplist branch 2 times, most recently from 153c401 to 098c076 Compare September 25, 2025 09:25
@evanlinjin evanlinjin moved this to In Progress in BDK Chain Sep 25, 2025
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Performance Benchmark Comparison

Benchmarks comparing the old O(n) implementation vs new skiplist O(√n) implementation for a 10,000 checkpoint chain:

🎯 Key Results

Operation Old Implementation Skiplist Implementation Speedup
get(100) - near start 98.270 μs 421 ns 233x faster
get(9000) - near end 9.668 μs 44 ns 220x faster
linear_traversal(100) 56.965 μs 110.66 μs 0.5x (expected*)

📊 Detailed Benchmarks

Finding checkpoint at position 100 (from 10k chain):

  • Old: 98.270 μs - Linear search from tip
  • New: 421 ns - Skip pointers jump directly to target
  • Improvement: 233x faster 🚀

Finding checkpoint at position 9000 (from 10k chain):

  • Old: 9.668 μs - Linear search through 1000 nodes
  • New: 44 ns - Skip pointers minimize traversal
  • Improvement: 220x faster 🚀

* Note: The linear_traversal benchmark shows the new implementation is slightly slower because it's doing the same linear traversal but with additional overhead from the skip/index fields. The real performance gains come from using the skiplist-aware methods like get(), floor_at(), and range().

Summary

The skiplist implementation provides massive performance improvements for checkpoint lookups, especially for deep searches in long chains. The O(√n) complexity is clearly demonstrated with 200x+ speedups in real-world scenarios.

@evanlinjin evanlinjin self-assigned this Sep 25, 2025
@evanlinjin evanlinjin force-pushed the feature/skiplist branch 2 times, most recently from 5544fee to 4b9ccd1 Compare October 17, 2025 10:36
@evanlinjin evanlinjin marked this pull request as ready for review October 17, 2025 12:14
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evanlinjin commented Oct 17, 2025

Guys, this is purely done by Claude. I haven't reviewed it yet.

It's now fully reviewed by myself! Made many simplifications.

Let's merge #2055 and rebase this on top of that!

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Skiplist Performance Update

After the optimizations, here are the updated benchmark results:

get() Performance

Benchmark Time Notes
get_100_near_start 475.89 ns Get checkpoint near start of 100-item chain
get_1000_middle 31.07 ns Get checkpoint in middle of 1000-item chain
get_10000_near_end 57.12 ns Get checkpoint near end of 10000-item chain
get_10000_near_start 535.37 ns Get checkpoint near start of 10000-item chain

floor_at() Performance

Benchmark Time Notes
floor_at_1000 286.33 ns Floor at height 750 in 1000-item chain
floor_at_10000 673.27 ns Floor at height 7500 in 10000-item chain

range() Performance

Benchmark Time Notes
range_1000_middle_10pct 1.67 µs Range 450..=550 in 1000-item chain
range_10000_large_50pct 97.59 µs Range 2500..=7500 in 10000-item chain
range_10000_from_start 3.11 µs Range ..=100 in 10000-item chain
range_10000_near_tip 1.21 µs Range 9900.. in 10000-item chain
range_single_element 942.21 ns Range 5000..=5000 in 10000-item chain

Traversal Comparison

Benchmark Time Notes
linear_traversal_10000 140.90 µs Linear search to height 100 in 10000-item chain
skiplist_get_10000 539.80 ns Skip-enhanced search to height 100 in 10000-item chain

Speedup: 261x faster with skip pointers!

Summary

The skip list implementation successfully achieves O(√n) time complexity for search operations. Key improvements from our optimizations:

  1. Cleaner two-phase traversal in get() and range()
  2. Simplified floor_at() from 33 lines to 1 line
  3. Restored elegant insert() implementation (removed 60+ lines)
  4. Refactored push() with clearer skip pointer logic

All tests pass and the implementation is now both performant and maintainable.

@evanlinjin evanlinjin force-pushed the feature/skiplist branch 2 times, most recently from 1455ce9 to 8986465 Compare October 19, 2025 11:41
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I think it should have more than a single level to achieve the optimal performance, but I'm not sure if that's possible without implementing a new type.

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This will be an improvement over linked list for sure, but I would like to combine efforts with block-graph/skiplist to avoid duplicated work.
I find some components of the skip list too tied up to the underlying data, making difficult to resonate about the functionality of the skip list by itself. I would like to detach the skiplist logic from the underlying data.
There is a lot of room for improvement for skiplist applied to our particular use case, so I'm positive there will be a lot of changes to a structure like it. I would try to make smaller PRs to check the improvements, but get results early.
In that sense, the benchmark is going to be very handy to ensure we are making progress.
A one level, fixed skip interval is a great starting point for that.

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evanlinjin commented Nov 10, 2025

I think it should have more than a single level to achieve the optimal performance, but I'm not sure if that's possible without implementing a new type.

@ValuedMammal I think the current state of the PR is a good balance between performance and simplicity (for now).

  • We are already achieving queries in the single-digit microsecond range for typical wallet sizes (1k-100k checkpoints). In other words, we can already easily do hundreds of thousands of block-queries in under a second.

  • Doing a multi-level skiplist will increase code complexity significantly and increase memory usage by ~20% (due to Vec overhead for multiple skip pointers - admittedly, that's not a lot).

Here is a performance summary by Claude:

Chain Size Checkpoints Current Multi-Level Speedup
Small wallet 1,000 23.5 ns ~4 ns 6x
Medium wallet 10,000 414 ns ~60 ns 7x
Large wallet 100,000 2.3 μs ~70 ns 33x
Full chain 870,000 18.2 μs ~83 ns 219x
  • The performance gain for wallets with 10,000 or less checkpoints is insignificant (probably the majority of wallets right now).

  • The performance gain for wallets with 100,000 checkpoints is significant - but probably not noticeable for the user.

  • Worst-case scenario: Let's say we have a large wallet with 10,000 transactions and we canonicalize against a full checkpoint chain: That's 182 milliseconds to query for all relevant blocks which is perfectly manageable for a local wallet.

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@nymius

I find some components of the skip list too tied up to the underlying data, making difficult to resonate about the functionality of the skip list by itself. I would like to detach the skiplist logic from the underlying data.

The current state of the PR is self-contained and reviewable - the changes are all internal changes to CheckPoint + tests + benchmarks. We modified two read methods (get, range) and a single write method (push). We added two fields in CheckPoint. The review surface is extremely minimal. A total of 126 additional lines in checkpoint.rs (including comments).

Are you wanting to detach because you see this skiplist logic being used elsewhere? The current skiplist implementation has domain-specific simplifications which won't exist in a full skiplist implementation (i.e. append-only in our push, immutable - no need to modify node data). Furthermore, a more generic skiplist implementation will be 1000+ lines of code.

I would try to make smaller PRs to check the improvements, but get results early.

I don't think splitting this PR into multiple PRs makes sense here. This is a single atomic change to CheckPoint. The majority of this PR is tests and benchmarks. The modification surface is tiny.


We may need a new internal type to make multi-level skiplist possible, and thus achieve optimal performance. I'm not opposed to this idea. However, I think this PR is a simple change that achieves good enough performance.

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nymius commented Nov 23, 2025

You've exposed good points and I agree with all of them. Will review again soon.

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I was about to open a PR for this. I'm hitting this problem running an LDK Node on mutinynet with bitcoind as chain source where there's a 2-second poll that calls Wallet::transactions(), and once the checkpoint chain is long enough the operation takes longer than 2 seconds, so the CPU never idles.

I took a different approach adding a BTreeMap<u32, CheckPoint> index on LocalChain for O(log n) lookups. Happy to share it, although I believe this change would suffice too

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nymius commented Apr 13, 2026

@martinsaposnic would you be open to benchmark your case against this branch?

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Needs rebase.

Comment thread crates/core/tests/test_checkpoint_skiplist.rs Outdated
Comment thread crates/core/benches/checkpoint_skiplist.rs
@evanlinjin evanlinjin changed the title Add skiplist to CheckPoint for O(√n) traversal feat(core): add skiplist to CheckPoint for faster traversal Apr 22, 2026
evanlinjin added a commit to evanlinjin/bdk that referenced this pull request Apr 22, 2026
Adds a skip pointer (every 100 checkpoints by index) and an index
field to CheckPoint to accelerate get(), floor_at(), and range().
push() and insert() maintain the index/skip invariants on the
rebuilt chain.

This is a ~100x constant-factor speedup on dense chains, not a
true O(sqrt(n)) bound: a fixed interval k gives O(n/k + k), which
is asymptotically linear. For BDK's realistic size regime (up to
~1M dense checkpoints on a server), that constant factor is
ample -- a full-chain get() drops from ~1M pointer chases to ~10k
(tens of microseconds).

Motivated by the server-side scenario reported by @martinsaposnic
in bitcoindevkit#2048 where Wallet::transactions() exceeded a 2-second poll
budget on LDK-on-mutinynet with bitcoind as chain source, due to
O(n) checkpoint traversal over a dense chain. See:
bitcoindevkit#2048 (comment)

Benchmarks show ~265x speedup for deep searches in 10k checkpoint
chains (linear traversal ~108us vs skiplist get ~407ns).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
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evanlinjin commented Apr 22, 2026

Pushed a follow-up commit bumping CHECKPOINT_SKIP_INTERVAL from 100 to 1000.

Rationale

Traversal cost with a fixed skiplist interval k is O(n/k + k), minimized at k ≈ √n. The original k=100 was tuned for n ≈ 10,000, which isn't the workload that motivates this PR. The reported issue (comment) is a dense server chain near current tip height (~946k blocks), where √n ≈ 970. Rounding to 1000 aligns the constant with that regime.

Concretely

n k=100 hops k=1000 hops
946,000 ~9,560 ~1,950 (~5× faster)
464,000 (segwit-era) ~4,740 ~1,460
10,000 ~200 ~910 (slower, but still sub-µs)

Memory

No meaningful difference — Option<Arc<CPInner>> is niche-optimized to 8 bytes regardless of Some/None, so every node carries the same skip field. Skip pointers also reference existing nodes in the chain, so populated pointers don't trigger new heap allocations (just refcount increments on already-allocated ArcInners). k doesn't move the memory needle here.

Tradeoff

Chains shorter than ~1000 nodes no longer create any skip pointers. That's fine — linear traversal at n ≤ 1000 is already microseconds and wasn't the motivating problem. Small wallets weren't the target.

Left k as a fixed single-level constant rather than going multi-level / adaptive — for BDK's realistic size ceiling (~1M), the constant-factor win is sufficient and not worth the extra machinery. Happy to revisit if that changes.

(Edited: corrected an inaccurate claim about memory overhead — Option<Arc<_>> is niche-optimized so k doesn't meaningfully change memory usage.)

evanlinjin added a commit to evanlinjin/bdk that referenced this pull request Apr 23, 2026
Adds a skip pointer (every 100 checkpoints by index) and an index
field to CheckPoint to accelerate get(), floor_at(), and range().
push() and insert() maintain the index/skip invariants on the
rebuilt chain.

This is a ~100x constant-factor speedup on dense chains, not a
true O(sqrt(n)) bound: a fixed interval k gives O(n/k + k), which
is asymptotically linear. For BDK's realistic size regime (up to
~1M dense checkpoints on a server), that constant factor is
ample -- a full-chain get() drops from ~1M pointer chases to ~10k
(tens of microseconds).

Motivated by the server-side scenario reported by @martinsaposnic
in bitcoindevkit#2048 where Wallet::transactions() exceeded a 2-second poll
budget on LDK-on-mutinynet with bitcoind as chain source, due to
O(n) checkpoint traversal over a dense chain. See:
bitcoindevkit#2048 (comment)

Benchmarks show ~265x speedup for deep searches in 10k checkpoint
chains (linear traversal ~108us vs skiplist get ~407ns).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
evanlinjin and others added 2 commits April 23, 2026 15:48
Adds a skip pointer (every 100 checkpoints by index) and an index
field to CheckPoint to accelerate get(), floor_at(), and range().
push() and insert() maintain the index/skip invariants on the
rebuilt chain.

This is a ~100x constant-factor speedup on dense chains, not a
true O(sqrt(n)) bound: a fixed interval k gives O(n/k + k), which
is asymptotically linear. For BDK's realistic size regime (up to
~1M dense checkpoints on a server), that constant factor is
ample -- a full-chain get() drops from ~1M pointer chases to ~10k
(tens of microseconds).

Motivated by the server-side scenario reported by @martinsaposnic
in bitcoindevkit#2048 where Wallet::transactions() exceeded a 2-second poll
budget on LDK-on-mutinynet with bitcoind as chain source, due to
O(n) checkpoint traversal over a dense chain. See:
bitcoindevkit#2048 (comment)

Benchmarks show ~265x speedup for deep searches in 10k checkpoint
chains (linear traversal ~108us vs skiplist get ~407ns).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
The skiplist's fixed interval k trades off as O(n/k + k), minimized
when k ~ sqrt(n). The motivating workload (dense server chains near
the current Bitcoin tip, n ~ 1M) sits far above the k=100 sweet
spot of n ~ 10k. Bumping to k=1000 brings the interval closer to
sqrt(1M) and yields ~5x better worst-case traversal for that case
(roughly 2k hops instead of 10k).

Memory is unchanged: Option<Arc<CPInner>> is niche-optimized to 8
bytes regardless of Some/None, so every node carries the same
skip field, and skip pointers reference existing chain nodes (no
new heap allocations -- just refcount bumps on already-allocated
ArcInners). k only affects traversal performance, not footprint.

Smaller chains (n < 1000) no longer gain anything from the
skiplist, but linear traversal at that scale is already
microseconds -- not a workload we need to optimize.

Update test_skiplist_indices to verify skip pointer placement at
the new interval using a 5000-node chain.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Addresses review feedback from @nymius: existing benches use fixed
targets, which can land favorably or unfavorably relative to skip
pointer positions and don't reflect real query patterns. The new
bench draws 256 targets from a deterministic xorshift sequence and
runs both a skiplist-enhanced get() and a plain linear walk over
a 100k-node chain, so the same query stream exercises both paths.

100k is large enough to show the skiplist win clearly (100× fewer
hops at k=1000) without slowing harness setup.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
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evanlinjin commented Apr 23, 2026

@nymius For the random access benchmark introduced in d7410c6;

random_access_linear_100k got 1.07 ms
random_access_skiplist_100k got 11.86 µs

~90x speedup

@evanlinjin evanlinjin requested a review from nymius April 23, 2026 16:42
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ValuedMammal commented Apr 27, 2026

I recommend looking at how it's done in block-graph and read up on the blog post for a conceptual overview.

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