Add early validation for duplicate experimental design combinations#620

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Copilot wants to merge 7 commits intodevfrom

copilot/fix-internal-error-fraction-group

Commits on Dec 3, 2025

Initial plan
Copilot
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Add experimental design validation for duplicate combinations

Copilot
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ypriverol
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Fix code review feedback: use lowercase file property and UTF-8 encoding

Copilot
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ypriverol
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Integrate validation into SDRF_PARSING and PREPROCESS_EXPDESIGN processes

Copilot
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ypriverol
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Add consistent logging for validation in PREPROCESS_EXPDESIGN

Copilot
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ypriverol
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Prepare integration with quantms-utils for validation command

Copilot
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ypriverol
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Remove QUANTMS_UTILS_INTEGRATION.md documentation file

Copilot
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ypriverol
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