Feat/devsu 2848 update seqqc json

[elewis2]

No description provided.

[codecov-commenter]

Codecov Report

❌ Patch coverage is 94.11765% with 1 line in your changes missing coverage. Please review.
✅ Project coverage is 83.55%. Comparing base (8777c66) to head (e2c25ef).
⚠️ Report is 2 commits behind head on develop.

Files with missing lines	Patch %	Lines
pori_python/ipr/inputs.py	93.75%	1 Missing ⚠️

Additional details and impacted files

@@             Coverage Diff             @@
##           develop     #109      +/-   ##
===========================================
+ Coverage    83.46%   83.55%   +0.08%     
===========================================
  Files           18       18              
  Lines         2546     2566      +20     
===========================================
+ Hits          2125     2144      +19     
- Misses         421      422       +1     

Flag	Coverage Δ
unittests	83.55% <94.11%> (+0.08%)	⬆️

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[Copilot]

Pull request overview

This PR introduces support for a new seqQC section in IPR report content by extending the JSON schema, adding a normalization step to translate legacy/production seqQC field names to the schema format, and adding tests to validate both normalization and upload behavior.

Changes:

• Added seqQC to content.spec.json so reports can include sequencing QC metadata.
• Added normalize_seqqc() and invoked it before schema validation to remap legacy seqQC keys to schema-compliant names.
• Added unit/integration tests covering seqQC normalization and confirming seqQC persists through upload/load.

Reviewed changes

Copilot reviewed 5 out of 5 changed files in this pull request and generated 4 comments.

Show a summary per file

File	Description
tests/test_ipr/test_upload.py	Extends upload fixture content with seqQC and verifies it is present after report upload/load.
tests/test_ipr/test_inputs.py	Adds unit tests for normalize_seqqc() behavior across legacy, normalized, missing, and multi-item inputs.
pori_python/ipr/main.py	Calls normalize_seqqc(content) prior to schema validation in ipr_report().
pori_python/ipr/inputs.py	Implements normalize_seqqc() to map production/legacy seqQC keys to schema keys.
pori_python/ipr/content.spec.json	Adds seqQC array schema definition to the report content specification.

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[Copilot]

Pull request overview

Copilot reviewed 5 out of 5 changed files in this pull request and generated 2 comments.

[Copilot]

Pull request overview

Copilot reviewed 5 out of 5 changed files in this pull request and generated 1 comment.

[mathieulemieux]

side-effect-driven programming... Do you still want to return?

[elewis2]

Discussed offline, I see what you're saying and will fix