Release/v1.3.0

[elewis2]

v1.3.0 release notes:

New features:

• DEVSU-2769: include HRD score in report
• DEVSU-2786: get NCIT id when statement is about trial eligibility
• DEVSU-2856: use graphkb disease match list to determine whether the IPR variant-text entry matches the input disease

Improvements:

• DEVSU-2855: remove biopython dependency
• DEVSU-2797: remove default urls specific to GSC deployment

Bugfixes:

• DEVSU-2793: don't include "orphan" kbmatches from key alterations table in genomic reports when the associated statement condition sets are not fully satisfied

Chores:

• DEVSU-2583: switch from black/flake8/isort to ruff

[codecov-commenter]

Codecov Report

❌ Patch coverage is 77.91165% with 165 lines in your changes missing coverage. Please review.
✅ Project coverage is 82.88%. Comparing base (1a7b075) to head (9644926).

Files with missing lines	Patch %	Lines
pori_python/ipr/main.py	53.84%	36 Missing ⚠️
pori_python/ipr/annotate.py	43.63%	31 Missing ⚠️
pori_python/ipr/connection.py	18.18%	27 Missing ⚠️
pori_python/ipr/inputs.py	85.24%	18 Missing ⚠️
pori_python/graphkb/util.py	85.26%	14 Missing ⚠️
pori_python/ipr/therapeutic_options.py	0.00%	13 Missing ⚠️
pori_python/ipr/ipr.py	85.13%	11 Missing ⚠️
pori_python/graphkb/genes.py	94.20%	4 Missing ⚠️
pori_python/ipr/summary.py	95.45%	4 Missing ⚠️
pori_python/graphkb/match.py	94.73%	3 Missing ⚠️
... and 2 more

❌ Your patch status has failed because the patch coverage (77.91%) is below the target coverage (80.00%). You can increase the patch coverage or adjust the target coverage.

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #101      +/-   ##
==========================================
- Coverage   83.30%   82.88%   -0.42%     
==========================================
  Files          18       18              
  Lines        2438     2466      +28     
==========================================
+ Hits         2031     2044      +13     
- Misses        407      422      +15     

Flag	Coverage Δ
unittests	82.88% <77.91%> (-0.42%)	⬇️

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