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Switch to ruff#100

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sshugsc merged 6 commits intodevelopfrom
switch-to-ruff
Feb 9, 2026
Merged

Switch to ruff#100
sshugsc merged 6 commits intodevelopfrom
switch-to-ruff

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@sshugsc
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@sshugsc sshugsc commented Feb 6, 2026

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@sshugsc sshugsc self-assigned this Feb 6, 2026
@mathieulemieux
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non-blocking, but it would have been nice to have the functional changes in a seperate commit than the formatting.

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codecov-commenter commented Feb 7, 2026

Codecov Report

❌ Patch coverage is 77.38265% with 159 lines in your changes missing coverage. Please review.
✅ Project coverage is 83.09%. Comparing base (1092e1f) to head (5b29d4f).
⚠️ Report is 6 commits behind head on develop.

Files with missing lines Patch % Lines
pori_python/ipr/annotate.py 43.63% 31 Missing ⚠️
pori_python/ipr/main.py 46.55% 31 Missing ⚠️
pori_python/ipr/connection.py 18.18% 27 Missing ⚠️
pori_python/ipr/inputs.py 84.21% 18 Missing ⚠️
pori_python/graphkb/util.py 86.02% 13 Missing ⚠️
pori_python/ipr/therapeutic_options.py 0.00% 13 Missing ⚠️
pori_python/ipr/ipr.py 83.33% 11 Missing ⚠️
pori_python/graphkb/genes.py 94.20% 4 Missing ⚠️
pori_python/ipr/summary.py 95.34% 4 Missing ⚠️
pori_python/graphkb/match.py 94.73% 3 Missing ⚠️
... and 2 more

❌ Your patch status has failed because the patch coverage (77.38%) is below the target coverage (80.00%). You can increase the patch coverage or adjust the target coverage.

Additional details and impacted files
@@             Coverage Diff             @@
##           develop     #100      +/-   ##
===========================================
+ Coverage    83.06%   83.09%   +0.02%     
===========================================
  Files           18       18              
  Lines         2463     2466       +3     
===========================================
+ Hits          2046     2049       +3     
  Misses         417      417              
Flag Coverage Δ
unittests 83.09% <77.38%> (+0.02%) ⬆️

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@sshugsc sshugsc merged commit b728677 into develop Feb 9, 2026
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3 participants